STRINGSTRING
LOC102213887 LOC102213887 snrpd3 snrpd3 luc7l3 luc7l3 snrpd2 snrpd2 snrpd1 snrpd1 snrpg snrpg snrpa snrpa snrpe snrpe SNRPC SNRPC prpf39 prpf39 prpf40a prpf40a LOC102202464 LOC102202464 ENSPNYP00000028858 ENSPNYP00000028858 ENSPNYP00000023738 ENSPNYP00000023738 snrpb2 snrpb2 snrpb snrpb
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC102213887Si:ch211-114c17.1. (646 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (487 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (280 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (817 aa)
LOC102202464Zgc:158803. (433 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSPNYP00000023738LUC7-like (S. cerevisiae). (260 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (247 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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