23 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbm41	RNA binding motif protein 41. (444 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
	rbmx	RNA binding motif protein X-linked. (391 aa)
	zmat5	Zinc finger, matrin-type 5. (175 aa)
	zcrb1	Zinc finger CCHC-type and RNA binding motif 1. (219 aa)
	DHX15	DEAH-box helicase 15. (762 aa)
	sf3b2	Splicing factor 3b, subunit 2. (740 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	ENSPNYP00000028858	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	rnpc3	RNA-binding region (RNP1, RRM) containing 3. (498 aa)
	ENSPNYP00000026924	Uncharacterized protein. (370 aa)
	zrsr2	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (524 aa)
	snrnp48	Small nuclear ribonucleoprotein 48 (U11/U12). (311 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1311 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	sf3b4	Splicing factor 3b, subunit 4. (401 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LOC102212555	DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	snrnp70	Small nuclear ribonucleoprotein 70 (U1). (475 aa)
	snrnp25	Small nuclear ribonucleoprotein 25. (185 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX15	ENSPNYP00000028858	ENSPNYP00000010681	ENSPNYP00000028858	DEAH-box helicase 15.	Small nuclear ribonucleoprotein polypeptide F.	0.969
DHX15	LOC102212555	ENSPNYP00000010681	ENSPNYP00000008959	DEAH-box helicase 15.	DEAH (Asp-Glu-Ala-His) box helicase 15.	0.821
DHX15	phf5a	ENSPNYP00000010681	ENSPNYP00000005658	DEAH-box helicase 15.	PHD finger protein 5A.	0.887
DHX15	rbm41	ENSPNYP00000010681	ENSPNYP00000016770	DEAH-box helicase 15.	RNA binding motif protein 41.	0.824
DHX15	rbmx	ENSPNYP00000010681	ENSPNYP00000016541	DEAH-box helicase 15.	RNA binding motif protein X-linked.	0.445
DHX15	rnpc3	ENSPNYP00000010681	ENSPNYP00000027353	DEAH-box helicase 15.	RNA-binding region (RNP1, RRM) containing 3.	0.824
DHX15	sf3b1	ENSPNYP00000010681	ENSPNYP00000019804	DEAH-box helicase 15.	Splicing factor 3b, subunit 1.	0.964
DHX15	sf3b2	ENSPNYP00000010681	ENSPNYP00000031295	DEAH-box helicase 15.	Splicing factor 3b, subunit 2.	0.889
DHX15	sf3b4	ENSPNYP00000010681	ENSPNYP00000016766	DEAH-box helicase 15.	Splicing factor 3b, subunit 4.	0.890
DHX15	sf3b5	ENSPNYP00000010681	ENSPNYP00000002625	DEAH-box helicase 15.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.849
DHX15	sf3b6	ENSPNYP00000010681	ENSPNYP00000028978	DEAH-box helicase 15.	Splicing factor 3b, subunit 6.	0.836
DHX15	snrnp48	ENSPNYP00000010681	ENSPNYP00000020350	DEAH-box helicase 15.	Small nuclear ribonucleoprotein 48 (U11/U12).	0.601
DHX15	snrnp70	ENSPNYP00000010681	ENSPNYP00000004230	DEAH-box helicase 15.	Small nuclear ribonucleoprotein 70 (U1).	0.495
DHX15	snrpd1	ENSPNYP00000010681	ENSPNYP00000014413	DEAH-box helicase 15.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.961
DHX15	snrpd3	ENSPNYP00000010681	ENSPNYP00000017633	DEAH-box helicase 15.	Small nuclear ribonucleoprotein Sm D3.	0.966
DHX15	snrpg	ENSPNYP00000010681	ENSPNYP00000011810	DEAH-box helicase 15.	Small nuclear ribonucleoprotein G.	0.959
DHX15	zcrb1	ENSPNYP00000010681	ENSPNYP00000011020	DEAH-box helicase 15.	Zinc finger CCHC-type and RNA binding motif 1.	0.400
DHX15	zrsr2	ENSPNYP00000010681	ENSPNYP00000024425	DEAH-box helicase 15.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.409
ENSPNYP00000026924	ENSPNYP00000028858	ENSPNYP00000026924	ENSPNYP00000028858	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.797
ENSPNYP00000026924	snrnp25	ENSPNYP00000026924	ENSPNYP00000010518	Uncharacterized protein.	Small nuclear ribonucleoprotein 25.	0.888