STRINGSTRING
rbm41 rbm41 lsm11 lsm11 rbm22 rbm22 ENSPNYP00000031552 ENSPNYP00000031552 ENSPNYP00000031550 ENSPNYP00000031550 rnpc3 rnpc3 LOC102200440 LOC102200440 LOC102205988 LOC102205988 prpf31 prpf31 LSM10 LSM10 snrnp70 snrnp70 snrpa1 snrpa1 sf3b3 sf3b3 SNRPC SNRPC snrpa snrpa prpf4 prpf4 LOC102197309 LOC102197309 lsm3 lsm3 LOC102200362 LOC102200362 lrmda lrmda eftud2 eftud2 rbmx rbmx ro60 ro60 toe1 toe1 snu13 snu13 lsm4 lsm4 mettl16 mettl16 prpf8 prpf8 sart3 sart3 ncbp2 ncbp2 LOC102205341 LOC102205341 snrpb2 snrpb2 LOC102204925 LOC102204925 gemin5 gemin5 snrpd3 snrpd3 LOC102205867 LOC102205867 ccnt1 ccnt1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rbm41RNA binding motif protein 41. (444 aa)
lsm11LSM11, U7 small nuclear RNA associated. (334 aa)
rbm22RNA binding motif protein 22. (363 aa)
ENSPNYP00000031552La ribonucleoprotein domain family, member 7. (250 aa)
ENSPNYP00000031550RRM_3 domain-containing protein. (93 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (498 aa)
LOC102200440Uncharacterized protein. (180 aa)
LOC102205988Bin3-type SAM domain-containing protein. (552 aa)
prpf31PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (475 aa)
snrpa1Small nuclear ribonucleoprotein polypeptide A. (243 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
snrpaSmall nuclear ribonucleoprotein polypeptide A. (280 aa)
prpf4PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
LOC102197309Cyclin T2b; Belongs to the cyclin family. (566 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
LOC102200362CYCLIN domain-containing protein; Belongs to the cyclin family. (195 aa)
lrmdaLeucine rich melanocyte differentiation associated. (195 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
rbmxRNA binding motif protein X-linked. (391 aa)
ro60Ro60, Y RNA binding protein. (560 aa)
toe1Target of EGR1, exonuclease. (530 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (521 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (950 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
LOC102205341Methylphosphate capping enzyme. (761 aa)
snrpb2Small nuclear ribonucleoprotein polypeptide B2. (247 aa)
LOC102204925Leucine rich repeat containing 51. (179 aa)
gemin5Gem (nuclear organelle) associated protein 5. (1419 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
LOC102205867HEXIM P-TEFb complex subunit 1. (359 aa)
ccnt1Cyclin T1; Belongs to the cyclin family. (700 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.