30 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
	ENSPNYP00000028858	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (81 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
	usp39	Ubiquitin specific peptidase 39. (500 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	prpf8	Pre-mRNA processing factor 8. (2333 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	LOC102205645	Zgc:153119. (328 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	lsm2	Smx5. (140 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000028858	LOC102205645	ENSPNYP00000028858	ENSPNYP00000008036	Small nuclear ribonucleoprotein polypeptide F.	Zgc:153119.	0.984
ENSPNYP00000028858	SART1	ENSPNYP00000028858	ENSPNYP00000019537	Small nuclear ribonucleoprotein polypeptide F.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.993
ENSPNYP00000028858	ddx23	ENSPNYP00000028858	ENSPNYP00000027966	Small nuclear ribonucleoprotein polypeptide F.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.983
ENSPNYP00000028858	eftud2	ENSPNYP00000028858	ENSPNYP00000016503	Small nuclear ribonucleoprotein polypeptide F.	Elongation factor Tu GTP binding domain containing 2.	0.999
ENSPNYP00000028858	lsm2	ENSPNYP00000028858	ENSPNYP00000025572	Small nuclear ribonucleoprotein polypeptide F.	Smx5.	0.998
ENSPNYP00000028858	lsm3	ENSPNYP00000028858	ENSPNYP00000012583	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
ENSPNYP00000028858	lsm4	ENSPNYP00000028858	ENSPNYP00000022236	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
ENSPNYP00000028858	lsm5	ENSPNYP00000028858	ENSPNYP00000029509	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.996
ENSPNYP00000028858	lsm6	ENSPNYP00000028858	ENSPNYP00000016647	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.987
ENSPNYP00000028858	lsm7	ENSPNYP00000028858	ENSPNYP00000009117	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
ENSPNYP00000028858	lsm8	ENSPNYP00000028858	ENSPNYP00000015100	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSPNYP00000028858	prpf18	ENSPNYP00000028858	ENSPNYP00000004596	Small nuclear ribonucleoprotein polypeptide F.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.863
ENSPNYP00000028858	prpf3	ENSPNYP00000028858	ENSPNYP00000005580	Small nuclear ribonucleoprotein polypeptide F.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.975
ENSPNYP00000028858	prpf31	ENSPNYP00000028858	ENSPNYP00000002881	Small nuclear ribonucleoprotein polypeptide F.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.985
ENSPNYP00000028858	prpf4	ENSPNYP00000028858	ENSPNYP00000010584	Small nuclear ribonucleoprotein polypeptide F.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.981
ENSPNYP00000028858	prpf6	ENSPNYP00000028858	ENSPNYP00000002511	Small nuclear ribonucleoprotein polypeptide F.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.996
ENSPNYP00000028858	prpf8	ENSPNYP00000028858	ENSPNYP00000021743	Small nuclear ribonucleoprotein polypeptide F.	Pre-mRNA processing factor 8.	0.998
ENSPNYP00000028858	snrnp200	ENSPNYP00000028858	ENSPNYP00000023255	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein 200 (U5).	0.998
ENSPNYP00000028858	snrnp40	ENSPNYP00000028858	ENSPNYP00000012663	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein 40 (U5).	0.992
ENSPNYP00000028858	snrpb	ENSPNYP00000028858	ENSPNYP00000019566	Small nuclear ribonucleoprotein polypeptide F.	Small nuclear ribonucleoprotein-associated protein.	0.995