15 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102206399	WD_REPEATS_REGION domain-containing protein. (315 aa)
	setd1b	SET domain containing 1B, histone lysine methyltransferase a. (1800 aa)
	ENSPNYP00000024619	Uncharacterized protein. (115 aa)
	ENSPNYP00000003679	Uncharacterized protein. (393 aa)
	ENSPNYP00000024628	Uncharacterized protein. (273 aa)
	wdr5	WD repeat domain 5. (333 aa)
	cxxc1	CXXC finger protein 1b. (538 aa)
	ash2l	Ash2 like, histone lysine methyltransferase complex subunit. (590 aa)
	wdr82	WD repeat domain 82. (313 aa)
	ENSPNYP00000026964	Uncharacterized protein. (289 aa)
	dpy30	Dpy-30 histone methyltransferase complex regulatory subunit. (104 aa)
	LOC102202355	CXXC finger protein 1a. (568 aa)
	rbbp5	Retinoblastoma binding protein 5. (578 aa)
	hcfc2	Host cell factor C2. (761 aa)
	setd1a	SET domain containing 1A, histone lysine methyltransferase. (2194 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000003679	ENSPNYP00000024628	ENSPNYP00000003679	ENSPNYP00000024628	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSPNYP00000003679	ENSPNYP00000026964	ENSPNYP00000003679	ENSPNYP00000026964	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSPNYP00000003679	LOC102202355	ENSPNYP00000003679	ENSPNYP00000027424	Uncharacterized protein.	CXXC finger protein 1a.	0.424
ENSPNYP00000003679	cxxc1	ENSPNYP00000003679	ENSPNYP00000021015	Uncharacterized protein.	CXXC finger protein 1b.	0.424
ENSPNYP00000003679	dpy30	ENSPNYP00000003679	ENSPNYP00000021166	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.614
ENSPNYP00000003679	setd1a	ENSPNYP00000003679	ENSPNYP00000018717	Uncharacterized protein.	SET domain containing 1A, histone lysine methyltransferase.	0.505
ENSPNYP00000003679	setd1b	ENSPNYP00000003679	ENSPNYP00000012609	Uncharacterized protein.	SET domain containing 1B, histone lysine methyltransferase a.	0.505
ENSPNYP00000024619	ENSPNYP00000024628	ENSPNYP00000024619	ENSPNYP00000024628	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSPNYP00000024619	ENSPNYP00000026964	ENSPNYP00000024619	ENSPNYP00000026964	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSPNYP00000024619	LOC102202355	ENSPNYP00000024619	ENSPNYP00000027424	Uncharacterized protein.	CXXC finger protein 1a.	0.883
ENSPNYP00000024619	LOC102206399	ENSPNYP00000024619	ENSPNYP00000012700	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.873
ENSPNYP00000024619	ash2l	ENSPNYP00000024619	ENSPNYP00000025657	Uncharacterized protein.	Ash2 like, histone lysine methyltransferase complex subunit.	0.967
ENSPNYP00000024619	cxxc1	ENSPNYP00000024619	ENSPNYP00000021015	Uncharacterized protein.	CXXC finger protein 1b.	0.883
ENSPNYP00000024619	dpy30	ENSPNYP00000024619	ENSPNYP00000021166	Uncharacterized protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.921
ENSPNYP00000024619	hcfc2	ENSPNYP00000024619	ENSPNYP00000020685	Uncharacterized protein.	Host cell factor C2.	0.680
ENSPNYP00000024619	rbbp5	ENSPNYP00000024619	ENSPNYP00000029446	Uncharacterized protein.	Retinoblastoma binding protein 5.	0.967
ENSPNYP00000024619	wdr5	ENSPNYP00000024619	ENSPNYP00000025319	Uncharacterized protein.	WD repeat domain 5.	0.890
ENSPNYP00000024619	wdr82	ENSPNYP00000024619	ENSPNYP00000022797	Uncharacterized protein.	WD repeat domain 82.	0.873
ENSPNYP00000024628	ENSPNYP00000003679	ENSPNYP00000024628	ENSPNYP00000003679	Uncharacterized protein.	Uncharacterized protein.	0.585
ENSPNYP00000024628	ENSPNYP00000024619	ENSPNYP00000024628	ENSPNYP00000024619	Uncharacterized protein.	Uncharacterized protein.	0.680