STRINGSTRING
zc3h14 zc3h14 fmr1 fmr1 ENSPNYP00000000499 ENSPNYP00000000499 prpf19 prpf19 tra2b tra2b u2af2 u2af2 khdrbs1 khdrbs1 ENSPNYP00000002289 ENSPNYP00000002289 LOC102200754 LOC102200754 RBM20 RBM20 SMU1 SMU1 rest rest LOC102206250 LOC102206250 PUF60 PUF60 ptcd2 ptcd2 LOC102211047 LOC102211047 ENSPNYP00000005294 ENSPNYP00000005294 celf4 celf4 LOC102212524 LOC102212524 LOC102196897 LOC102196897 LOC102215854 LOC102215854 LOC102194672 LOC102194672 sf1 sf1 ENSPNYP00000006096 ENSPNYP00000006096 LOC102214384 LOC102214384 SNRPC SNRPC ENSPNYP00000006596 ENSPNYP00000006596 rbm15 rbm15 LOC102203974 LOC102203974 LOC102200118 LOC102200118 srsf7 srsf7 RBM5 RBM5 ENSPNYP00000008328 ENSPNYP00000008328 srpk2 srpk2 cirbp cirbp KHDRBS3 KHDRBS3 cpsf7 cpsf7 ENSPNYP00000009794 ENSPNYP00000009794 cpsf6 cpsf6 ncl ncl LOC102212070 LOC102212070 LOC102214151 LOC102214151 fam172a fam172a zc3h10 zc3h10 LOC102212898 LOC102212898 c1qbp c1qbp LOC102203691 LOC102203691 ENSPNYP00000029149 ENSPNYP00000029149 ENSPNYP00000029302 ENSPNYP00000029302 snw1 snw1 LOC102206317 LOC102206317 wtap wtap ENSPNYP00000029690 ENSPNYP00000029690 srpk1 srpk1 LOC102201471 LOC102201471 zc3h3 zc3h3 rbm25 rbm25 ENSPNYP00000031351 ENSPNYP00000031351 ENSPNYP00000031380 ENSPNYP00000031380 LOC102196915 LOC102196915 ENSPNYP00000031550 ENSPNYP00000031550 ENSPNYP00000031552 ENSPNYP00000031552 ENSPNYP00000031599 ENSPNYP00000031599 ENSPNYP00000031601 ENSPNYP00000031601 ENSPNYP00000031620 ENSPNYP00000031620 ENSPNYP00000031986 ENSPNYP00000031986 SRSF3 SRSF3 dhx36 dhx36 smu1 smu1 ENSPNYP00000010244 ENSPNYP00000010244 LOC102206670 LOC102206670 ENSPNYP00000011048 ENSPNYP00000011048 dhx9 dhx9 LOC102211501 LOC102211501 LOC102210600 LOC102210600 ybx1 ybx1 LOC102192139 LOC102192139 cpeb1 cpeb1 LOC102213929 LOC102213929 rbm24 rbm24 celf6 celf6 ENSPNYP00000015176 ENSPNYP00000015176 LOC102193112 LOC102193112 LOC102199287 LOC102199287 ythdc1 ythdc1 jmjd6 jmjd6 LOC102200698 LOC102200698 rbmx rbmx sfswap sfswap sf3b4 sf3b4 raver1 raver1 rbm8a rbm8a LOC102198387 LOC102198387 sltm sltm ENSPNYP00000018438 ENSPNYP00000018438 ENSPNYP00000018454 ENSPNYP00000018454 fxr1 fxr1 nudt21 nudt21 rbm5 rbm5 LOC102201286 LOC102201286 LOC102213243 LOC102213243 LOC102199369 LOC102199369 LOC102192616 LOC102192616 LOC106456289 LOC106456289 celf2 celf2 LOC102208765 LOC102208765 LOC102213236 LOC102213236 mettl16 mettl16 eif4a3 eif4a3 ENSPNYP00000022567 ENSPNYP00000022567 dazap1 dazap1 celf5 celf5 DDX5 DDX5 LOC102203107 LOC102203107 acin1 acin1 ENSPNYP00000024123 ENSPNYP00000024123 virma virma LOC102201257 LOC102201257 ncmap ncmap rbm15b rbm15b khdrbs2 khdrbs2 LOC102199388 LOC102199388 RBM38 RBM38 ENSPNYP00000026544 ENSPNYP00000026544 LOC102205021 LOC102205021 cdc73 cdc73 tra2a tra2a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
zc3h14Zinc finger CCCH-type containing 14. (664 aa)
fmr1Fragile X mental retardation 1. (536 aa)
ENSPNYP00000000499Uncharacterized protein. (365 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
tra2bTransformer 2 beta homolog. (283 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
khdrbs1KH domain containing, RNA binding, signal transduction associated 1a. (400 aa)
ENSPNYP00000002289Uncharacterized protein. (352 aa)
LOC102200754RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (380 aa)
RBM20RNA binding motif protein 20. (1143 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
restRE1-silencing transcription factor. (973 aa)
LOC102206250Uncharacterized protein. (533 aa)
PUF60Poly-U binding splicing factor b. (513 aa)
ptcd2Pentatricopeptide repeat domain 2. (388 aa)
LOC102211047Si:ch211-220i18.4; Belongs to the protein kinase superfamily. (316 aa)
ENSPNYP00000005294Nup96 domain-containing protein. (306 aa)
celf4CUGBP, Elav-like family member 4. (440 aa)
LOC102212524Cugbp, Elav-like family member 3b. (454 aa)
LOC102196897Uncharacterized protein. (522 aa)
LOC102215854RNA binding motif protein 39b. (511 aa)
LOC102194672KH domain containing, RNA binding, signal transduction associated 1b. (362 aa)
sf1Splicing factor 1. (680 aa)
ENSPNYP00000006096Helicase ATP-binding domain-containing protein. (93 aa)
LOC102214384QKI, KH domain containing, RNA binding 2. (324 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
ENSPNYP00000006596PWI domain-containing protein. (238 aa)
rbm15RNA binding motif protein 15. (862 aa)
LOC102203974Apoptotic chromatin condensation inducer 1b. (1071 aa)
LOC102200118DEAD-box helicase 17; Belongs to the DEAD box helicase family. (649 aa)
srsf7Serine and arginine rich splicing factor 7a. (254 aa)
RBM5RNA binding motif protein 5. (702 aa)
ENSPNYP00000008328Uncharacterized protein. (151 aa)
srpk2Protein kinase domain-containing protein. (694 aa)
cirbpCold inducible RNA binding protein b. (183 aa)
KHDRBS3KH RNA binding domain containing, signal transduction associated 3. (332 aa)
cpsf7RRM domain-containing protein. (294 aa)
ENSPNYP00000009794Uncharacterized protein. (849 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
nclNucleolin. (693 aa)
LOC102212070RRM domain-containing protein. (463 aa)
LOC102214151DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (624 aa)
fam172aFamily with sequence similarity 172 member A. (348 aa)
zc3h10Zinc finger CCCH-type containing 10. (552 aa)
LOC102212898RRM domain-containing protein. (250 aa)
c1qbpComplement component 1, q subcomponent binding protein. (288 aa)
LOC102203691Mago homolog, exon junction complex subunit. (147 aa)
ENSPNYP00000029149SAP domain-containing protein. (54 aa)
ENSPNYP00000029302Uncharacterized protein. (144 aa)
snw1SNW domain containing 1. (536 aa)
LOC102206317Uncharacterized protein. (519 aa)
wtapWT1 associated protein. (421 aa)
ENSPNYP00000029690Uncharacterized protein. (112 aa)
srpk1SRSF protein kinase 1a. (647 aa)
LOC102201471RNA binding motif protein 25a. (801 aa)
zc3h3Zinc finger CCCH-type containing 3. (895 aa)
rbm25RNA binding motif protein 25b. (791 aa)
ENSPNYP00000031351STAR_dimer domain-containing protein. (72 aa)
ENSPNYP00000031380RRM domain-containing protein. (68 aa)
LOC102196915RRM domain-containing protein. (391 aa)
ENSPNYP00000031550RRM_3 domain-containing protein. (93 aa)
ENSPNYP00000031552La ribonucleoprotein domain family, member 7. (250 aa)
ENSPNYP00000031599Peptidase S59 domain-containing protein. (191 aa)
ENSPNYP00000031601Peptidase S59 domain-containing protein. (633 aa)
ENSPNYP00000031620RRM domain-containing protein. (113 aa)
ENSPNYP00000031986Nuclear speckle splicing regulatory protein 1. (524 aa)
SRSF3Serine and arginine rich splicing factor 3. (135 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (963 aa)
smu1SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
ENSPNYP00000010244Serine/arginine repetitive matrix 4. (444 aa)
LOC102206670SRSF protein kinase 1b. (511 aa)
ENSPNYP00000011048TFIIS N-terminal domain-containing protein. (661 aa)
dhx9DEAH (Asp-Glu-Ala-His) box helicase 9. (1258 aa)
LOC102211501Serine and arginine rich splicing factor 9. (241 aa)
LOC102210600RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (366 aa)
ybx1Y box binding protein 1. (300 aa)
LOC102192139RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (339 aa)
cpeb1Cytoplasmic polyadenylation element binding protein 1b. (564 aa)
LOC102213929Uncharacterized protein. (385 aa)
rbm24RNA binding motif protein 24a. (243 aa)
celf6Si:dkey-205h23.2. (406 aa)
ENSPNYP00000015176RRM domain-containing protein. (105 aa)
LOC102193112Cugbp, Elav-like family member 3a. (443 aa)
LOC102199287U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
ythdc1YTH domain containing 1. (681 aa)
jmjd6Jumonji domain containing 6, arginine demethylase and lysine hydroxylase. (403 aa)
LOC102200698RNA binding motif protein 7. (265 aa)
rbmxRNA binding motif protein X-linked. (391 aa)
sfswapSplicing factor SWAP. (976 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
raver1Ribonucleoprotein, PTB-binding 1. (696 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
LOC102198387RRM domain-containing protein. (161 aa)
sltmSAFB-like, transcription modulator. (995 aa)
ENSPNYP00000018438Uncharacterized protein. (295 aa)
ENSPNYP00000018454Uncharacterized protein. (130 aa)
fxr1Fragile X mental retardation, autosomal homolog 1. (690 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (200 aa)
rbm5RNA binding motif protein 5. (857 aa)
LOC102201286RRM domain-containing protein. (257 aa)
LOC102213243RNA binding motif protein 6. (1314 aa)
LOC102199369RNA binding motif protein 10. (944 aa)
LOC102192616Neuro-oncological ventral antigen 1. (522 aa)
LOC106456289RNA binding motif protein 24b. (235 aa)
celf2Cugbp, Elav-like family member 2. (478 aa)
LOC102208765Protein kinase domain-containing protein. (581 aa)
LOC102213236RNA binding fox-1 homolog 2. (458 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (521 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
ENSPNYP00000022567Sin3A-associated protein. (149 aa)
dazap1DAZ associated protein 1. (404 aa)
celf5Cugbp, Elav-like family member 5a. (478 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (633 aa)
LOC102203107QKI, KH domain containing, RNA binding a. (358 aa)
acin1Apoptotic chromatin condensation inducer 1a. (552 aa)
ENSPNYP00000024123SAP domain-containing protein. (1068 aa)
virmaVir like m6A methyltransferase associated. (1786 aa)
LOC102201257Fragile X mental retardation, autosomal homolog 2. (672 aa)
ncmapUncharacterized protein. (117 aa)
rbm15bRNA binding motif protein 15B. (845 aa)
khdrbs2KH domain containing, RNA binding, signal transduction associated 2. (344 aa)
LOC102199388Uncharacterized protein; Belongs to the DEAD box helicase family. (625 aa)
RBM38RNA binding motif protein 38. (244 aa)
ENSPNYP00000026544Uncharacterized protein. (136 aa)
LOC102205021SRSF protein kinase 3. (684 aa)
cdc73Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (530 aa)
tra2aTransformer 2 alpha homolog. (279 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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