(12 nodes) BRCA1-A complex network (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	abraxas1	Abraxas 1, BRCA1 A complex subunit. (346 aa)
	babam2	BRISC and BRCA1 A complex member 2. (400 aa)
	ENSPNYP00000000749	Uncharacterized protein. (95 aa)
	brca1	Uncharacterized protein. (1180 aa)
	ENSPNYP00000006654	Reverse transcriptase domain-containing protein. (471 aa)
	ENSPNYP00000008349	Reverse transcriptase domain-containing protein. (163 aa)
	babam1	BRISC and BRCA1 A complex member 1. (326 aa)
	ENSPNYP00000019133	RAP80_UIM domain-containing protein. (609 aa)
	ENSPNYP00000021180	BRCA1/BRCA2-containing complex, subunit 3. (278 aa)
	ENSPNYP00000025405	Uncharacterized protein. (98 aa)
	bard1	BRCA1 associated RING domain 1. (641 aa)
	ENSPNYP00000031920	Ig-like domain-containing protein. (308 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000000749	ENSPNYP00000021180	ENSPNYP00000000749	ENSPNYP00000021180	Uncharacterized protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.964
ENSPNYP00000000749	abraxas1	ENSPNYP00000000749	ENSPNYP00000014014	Uncharacterized protein.	Abraxas 1, BRCA1 A complex subunit.	0.465
ENSPNYP00000000749	babam1	ENSPNYP00000000749	ENSPNYP00000018502	Uncharacterized protein.	BRISC and BRCA1 A complex member 1.	0.980
ENSPNYP00000000749	babam2	ENSPNYP00000000749	ENSPNYP00000000497	Uncharacterized protein.	BRISC and BRCA1 A complex member 2.	0.964
ENSPNYP00000000749	bard1	ENSPNYP00000000749	ENSPNYP00000025440	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.876
ENSPNYP00000000749	brca1	ENSPNYP00000000749	ENSPNYP00000001203	Uncharacterized protein.	Uncharacterized protein.	0.954
ENSPNYP00000006654	ENSPNYP00000021180	ENSPNYP00000006654	ENSPNYP00000021180	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.964
ENSPNYP00000006654	abraxas1	ENSPNYP00000006654	ENSPNYP00000014014	Reverse transcriptase domain-containing protein.	Abraxas 1, BRCA1 A complex subunit.	0.465
ENSPNYP00000006654	babam1	ENSPNYP00000006654	ENSPNYP00000018502	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.980
ENSPNYP00000006654	babam2	ENSPNYP00000006654	ENSPNYP00000000497	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.964
ENSPNYP00000006654	bard1	ENSPNYP00000006654	ENSPNYP00000025440	Reverse transcriptase domain-containing protein.	BRCA1 associated RING domain 1.	0.876
ENSPNYP00000006654	brca1	ENSPNYP00000006654	ENSPNYP00000001203	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.954
ENSPNYP00000008349	ENSPNYP00000021180	ENSPNYP00000008349	ENSPNYP00000021180	Reverse transcriptase domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.952
ENSPNYP00000008349	babam1	ENSPNYP00000008349	ENSPNYP00000018502	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.957
ENSPNYP00000008349	babam2	ENSPNYP00000008349	ENSPNYP00000000497	Reverse transcriptase domain-containing protein.	BRISC and BRCA1 A complex member 2.	0.952
ENSPNYP00000008349	bard1	ENSPNYP00000008349	ENSPNYP00000025440	Reverse transcriptase domain-containing protein.	BRCA1 associated RING domain 1.	0.854
ENSPNYP00000008349	brca1	ENSPNYP00000008349	ENSPNYP00000001203	Reverse transcriptase domain-containing protein.	Uncharacterized protein.	0.933
ENSPNYP00000019133	ENSPNYP00000021180	ENSPNYP00000019133	ENSPNYP00000021180	RAP80_UIM domain-containing protein.	BRCA1/BRCA2-containing complex, subunit 3.	0.976
ENSPNYP00000019133	abraxas1	ENSPNYP00000019133	ENSPNYP00000014014	RAP80_UIM domain-containing protein.	Abraxas 1, BRCA1 A complex subunit.	0.626
ENSPNYP00000019133	babam1	ENSPNYP00000019133	ENSPNYP00000018502	RAP80_UIM domain-containing protein.	BRISC and BRCA1 A complex member 1.	0.990