44 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mfap1	Microfibril associated protein 1. (441 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	wbp4	Uncharacterized protein. (416 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (450 aa)
	prpf38a	Pre-mRNA processing factor 38A. (309 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	smu1	SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (687 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (81 aa)
	sf3b4	Splicing factor 3b, subunit 4. (401 aa)
	SNIP1	Smad nuclear interacting protein 1. (376 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
	sf3b2	Splicing factor 3b, subunit 2. (740 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	ENSPNYP00000028858	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	lsm2	Smx5. (140 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
	sf3a1	Splicing factor 3a, subunit 1. (784 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	prpf8	Pre-mRNA processing factor 8. (2333 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1311 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (243 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000028858	SART1	ENSPNYP00000028858	ENSPNYP00000019537	Small nuclear ribonucleoprotein polypeptide F.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.993
ENSPNYP00000028858	SMU1	ENSPNYP00000028858	ENSPNYP00000002997	Small nuclear ribonucleoprotein polypeptide F.	SMU1 DNA replication regulator and spliceosomal factor.	0.890
ENSPNYP00000028858	SNIP1	ENSPNYP00000028858	ENSPNYP00000017473	Small nuclear ribonucleoprotein polypeptide F.	Smad nuclear interacting protein 1.	0.923
ENSPNYP00000028858	cwc22	ENSPNYP00000028858	ENSPNYP00000013825	Small nuclear ribonucleoprotein polypeptide F.	CWC22 spliceosome associated protein homolog.	0.922
ENSPNYP00000028858	cwc27	ENSPNYP00000028858	ENSPNYP00000007106	Small nuclear ribonucleoprotein polypeptide F.	CWC27 spliceosome associated cyclophilin.	0.945
ENSPNYP00000028858	dhx16	ENSPNYP00000028858	ENSPNYP00000024886	Small nuclear ribonucleoprotein polypeptide F.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.965
ENSPNYP00000028858	eftud2	ENSPNYP00000028858	ENSPNYP00000016503	Small nuclear ribonucleoprotein polypeptide F.	Elongation factor Tu GTP binding domain containing 2.	0.999
ENSPNYP00000028858	lsm2	ENSPNYP00000028858	ENSPNYP00000025572	Small nuclear ribonucleoprotein polypeptide F.	Smx5.	0.998
ENSPNYP00000028858	lsm3	ENSPNYP00000028858	ENSPNYP00000012583	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
ENSPNYP00000028858	lsm4	ENSPNYP00000028858	ENSPNYP00000022236	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.989
ENSPNYP00000028858	lsm5	ENSPNYP00000028858	ENSPNYP00000029509	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.996
ENSPNYP00000028858	lsm6	ENSPNYP00000028858	ENSPNYP00000016647	Small nuclear ribonucleoprotein polypeptide F.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.987
ENSPNYP00000028858	lsm7	ENSPNYP00000028858	ENSPNYP00000009117	Small nuclear ribonucleoprotein polypeptide F.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.994
ENSPNYP00000028858	lsm8	ENSPNYP00000028858	ENSPNYP00000015100	Small nuclear ribonucleoprotein polypeptide F.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
ENSPNYP00000028858	mfap1	ENSPNYP00000028858	ENSPNYP00000004729	Small nuclear ribonucleoprotein polypeptide F.	Microfibril associated protein 1.	0.856
ENSPNYP00000028858	phf5a	ENSPNYP00000028858	ENSPNYP00000005658	Small nuclear ribonucleoprotein polypeptide F.	PHD finger protein 5A.	0.997
ENSPNYP00000028858	prpf3	ENSPNYP00000028858	ENSPNYP00000005580	Small nuclear ribonucleoprotein polypeptide F.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.975
ENSPNYP00000028858	prpf31	ENSPNYP00000028858	ENSPNYP00000002881	Small nuclear ribonucleoprotein polypeptide F.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.985
ENSPNYP00000028858	prpf38a	ENSPNYP00000028858	ENSPNYP00000007263	Small nuclear ribonucleoprotein polypeptide F.	Pre-mRNA processing factor 38A.	0.760
ENSPNYP00000028858	prpf4	ENSPNYP00000028858	ENSPNYP00000010584	Small nuclear ribonucleoprotein polypeptide F.	PRP4 pre-mRNA processing factor 4 homolog (yeast).	0.981