49 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sf3b5	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	prpf38b	Pre-mRNA processing factor 38B. (461 aa)
	smu1	SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)
	prpf4	PRP4 pre-mRNA processing factor 4 homolog (yeast). (510 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	lsm3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (687 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
	lsm8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	lsm6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (81 aa)
	sf3b4	Splicing factor 3b, subunit 4. (401 aa)
	SNIP1	Smad nuclear interacting protein 1. (376 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (769 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)
	sf3b1	Splicing factor 3b, subunit 1. (1311 aa)
	prpf8	Pre-mRNA processing factor 8. (2333 aa)
	lsm4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
	sf3a1	Splicing factor 3a, subunit 1. (784 aa)
	dhx16	DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
	lsm2	Smx5. (140 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	ENSPNYP00000028858	Small nuclear ribonucleoprotein polypeptide F. (85 aa)
	sf3b6	Splicing factor 3b, subunit 6. (125 aa)
	lsm5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	sf3b2	Splicing factor 3b, subunit 2. (740 aa)
	sf3a3	Splicing factor 3a, subunit 3. (501 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	lsm7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
	sf3a2	Splicing factor 3a, subunit 2. (294 aa)
	LOC102205645	Zgc:153119. (328 aa)
	snrpe	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
	prpf38a	Pre-mRNA processing factor 38A. (309 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (450 aa)
	ENSPNYP00000006193	Uncharacterized protein. (73 aa)
	wbp4	Uncharacterized protein. (416 aa)
	phf5a	PHD finger protein 5A. (110 aa)
	prpf3	PRP3 pre-mRNA processing factor 3 homolog (yeast). (723 aa)
	mfap1	Microfibril associated protein 1. (441 aa)
	sf3b3	Splicing factor 3b, subunit 3. (1217 aa)
	snrpa1	Small nuclear ribonucleoprotein polypeptide A. (243 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	prpf31	PRP31 pre-mRNA processing factor 31 homolog (yeast). (507 aa)
	prpf6	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000006193	ENSPNYP00000028858	ENSPNYP00000006193	ENSPNYP00000028858	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.923
ENSPNYP00000006193	LOC102205645	ENSPNYP00000006193	ENSPNYP00000008036	Uncharacterized protein.	Zgc:153119.	0.747
ENSPNYP00000006193	SART1	ENSPNYP00000006193	ENSPNYP00000019537	Uncharacterized protein.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.955
ENSPNYP00000006193	SNIP1	ENSPNYP00000006193	ENSPNYP00000017473	Uncharacterized protein.	Smad nuclear interacting protein 1.	0.999
ENSPNYP00000006193	cwc22	ENSPNYP00000006193	ENSPNYP00000013825	Uncharacterized protein.	CWC22 spliceosome associated protein homolog.	0.961
ENSPNYP00000006193	cwc27	ENSPNYP00000006193	ENSPNYP00000007106	Uncharacterized protein.	CWC27 spliceosome associated cyclophilin.	0.966
ENSPNYP00000006193	dhx16	ENSPNYP00000006193	ENSPNYP00000024886	Uncharacterized protein.	DEAH (Asp-Glu-Ala-His) box polypeptide 16.	0.955
ENSPNYP00000006193	eftud2	ENSPNYP00000006193	ENSPNYP00000016503	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.938
ENSPNYP00000006193	lsm2	ENSPNYP00000006193	ENSPNYP00000025572	Uncharacterized protein.	Smx5.	0.860
ENSPNYP00000006193	lsm3	ENSPNYP00000006193	ENSPNYP00000012583	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.752
ENSPNYP00000006193	lsm4	ENSPNYP00000006193	ENSPNYP00000022236	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.845
ENSPNYP00000006193	lsm5	ENSPNYP00000006193	ENSPNYP00000029509	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.818
ENSPNYP00000006193	lsm6	ENSPNYP00000006193	ENSPNYP00000016647	Uncharacterized protein.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.862
ENSPNYP00000006193	lsm7	ENSPNYP00000006193	ENSPNYP00000009117	Uncharacterized protein.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.891
ENSPNYP00000006193	lsm8	ENSPNYP00000006193	ENSPNYP00000015100	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.849
ENSPNYP00000006193	mfap1	ENSPNYP00000006193	ENSPNYP00000004729	Uncharacterized protein.	Microfibril associated protein 1.	0.899
ENSPNYP00000006193	phf5a	ENSPNYP00000006193	ENSPNYP00000005658	Uncharacterized protein.	PHD finger protein 5A.	0.995
ENSPNYP00000006193	prpf3	ENSPNYP00000006193	ENSPNYP00000005580	Uncharacterized protein.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.928
ENSPNYP00000006193	prpf31	ENSPNYP00000006193	ENSPNYP00000002881	Uncharacterized protein.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.901
ENSPNYP00000006193	prpf38a	ENSPNYP00000006193	ENSPNYP00000007263	Uncharacterized protein.	Pre-mRNA processing factor 38A.	0.735