STRINGSTRING
snw1 snw1 DDX41 DDX41 slu7 slu7 rbm22 rbm22 sf3a3 sf3a3 paxbp1 paxbp1 u2af2 u2af2 dhx35 dhx35 prpf40a prpf40a aar2 aar2 crnkl1 crnkl1 prpf39 prpf39 SMU1 SMU1 snrnp70 snrnp70 prpf4b prpf4b prpf18 prpf18 sf3b3 sf3b3 mfap1 mfap1 LOC102194081 LOC102194081 hnrnpc hnrnpc ENSPNYP00000005329 ENSPNYP00000005329 wbp4 wbp4 sf1 sf1 ENSPNYP00000006193 ENSPNYP00000006193 adar adar SNRPC SNRPC ENSPNYP00000006596 ENSPNYP00000006596 cwc27 cwc27 ppwd1 ppwd1 prpf38a prpf38a LOC102198893 LOC102198893 ENSPNYP00000008031 ENSPNYP00000008031 mtrex mtrex cactin cactin hnrnpm hnrnpm ppie ppie LOC102212555 LOC102212555 sf3a2 sf3a2 prpf38b prpf38b ENSPNYP00000010244 ENSPNYP00000010244 snrnp25 snrnp25 DHX15 DHX15 zcrb1 zcrb1 zmat5 zmat5 ENSPNYP00000011626 ENSPNYP00000011626 ess2 ess2 ENSPNYP00000012475 ENSPNYP00000012475 snrnp40 snrnp40 cwf19l1 cwf19l1 cwc22 cwc22 cdc40 cdc40 myef2 myef2 snrpd1 snrpd1 LOC102199287 LOC102199287 eftud2 eftud2 rbmx rbmx sf3b4 sf3b4 rbm41 rbm41 SNIP1 SNIP1 luc7l3 luc7l3 snrpd3 snrpd3 yju2 yju2 shd shd dhx38 dhx38 rnf113a rnf113a gpkow gpkow xab2 xab2 ctnnbl1 ctnnbl1 ENSPNYP00000019900 ENSPNYP00000019900 LOC102213887 LOC102213887 wdr83 wdr83 snrnp48 snrnp48 ccdc130 ccdc130 sart3 sart3 ube2j1 ube2j1 ccdc12 ccdc12 mthfsd mthfsd aqr aqr ENSPNYP00000022113 ENSPNYP00000022113 UPF1 UPF1 eif4a3 eif4a3 LOC102193563 LOC102193563 snrnp200 snrnp200 ENSPNYP00000023738 ENSPNYP00000023738 tfip11 tfip11 gpatch1 gpatch1 uhrf1bp1 uhrf1bp1 bud31 bud31 sf3a1 sf3a1 dhx16 dhx16 WDR25 WDR25 cwc15 cwc15 EFL1 EFL1 ppil1 ppil1 rnpc3 rnpc3 ddx23 ddx23 ENSPNYP00000028858 ENSPNYP00000028858 ENSPNYP00000029188 ENSPNYP00000029188 zmat2 zmat2 sf3b2 sf3b2 ENSPNYP00000031633 ENSPNYP00000031633 LOC102202464 LOC102202464 ENSPNYP00000031925 ENSPNYP00000031925
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snw1SNW domain containing 1. (536 aa)
DDX41DEAD-box helicase 41. (614 aa)
slu7SLU7 homolog, splicing factor. (566 aa)
rbm22RNA binding motif protein 22. (363 aa)
sf3a3Splicing factor 3a, subunit 3. (501 aa)
paxbp1PAX3 and PAX7 binding protein 1. (891 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
dhx35DEAH-box helicase 35. (699 aa)
prpf40aPRP40 pre-mRNA processing factor 40 homolog A. (817 aa)
aar2AAR2 splicing factor. (386 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (755 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (475 aa)
prpf4bPre-mRNA processing factor 4Bb. (1014 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
mfap1Microfibril associated protein 1. (441 aa)
LOC102194081Uncharacterized protein. (1109 aa)
hnrnpcRRM domain-containing protein. (298 aa)
ENSPNYP00000005329Slu7 domain-containing protein. (228 aa)
wbp4Uncharacterized protein. (416 aa)
sf1Splicing factor 1. (680 aa)
ENSPNYP00000006193Uncharacterized protein. (73 aa)
adarAdenosine deaminase RNA specific. (1359 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
ENSPNYP00000006596PWI domain-containing protein. (238 aa)
cwc27CWC27 spliceosome associated cyclophilin. (450 aa)
ppwd1Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
LOC102198893GCFC domain-containing protein. (238 aa)
ENSPNYP00000008031Cir_N domain-containing protein. (67 aa)
mtrexMtr4 exosome RNA helicase. (1037 aa)
cactinCactin. (731 aa)
hnrnpmHeterogeneous nuclear ribonucleoprotein M. (665 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (299 aa)
LOC102212555DEAH (Asp-Glu-Ala-His) box helicase 15. (751 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
prpf38bPre-mRNA processing factor 38B. (461 aa)
ENSPNYP00000010244Serine/arginine repetitive matrix 4. (444 aa)
snrnp25Small nuclear ribonucleoprotein 25. (185 aa)
DHX15DEAH-box helicase 15. (762 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (219 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
ENSPNYP00000011626Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
ess2Ess-2 splicing factor homolog. (476 aa)
ENSPNYP00000012475Cwf21 domain-containing protein. (187 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
cwf19l1CWF19 like cell cycle control factor 1. (553 aa)
cwc22CWC22 spliceosome associated protein homolog. (687 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
myef2Myelin expression factor 2. (527 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
LOC102199287U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
rbmxRNA binding motif protein X-linked. (391 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
rbm41RNA binding motif protein 41. (444 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
luc7l3LUC7-like 3 pre-mRNA splicing factor. (487 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
yju2YJU2 splicing factor homolog. (340 aa)
shdSrc homology 2 domain containing transforming protein D, a. (406 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1242 aa)
rnf113aRing finger protein 113A. (322 aa)
gpkowG patch domain and KOW motifs. (518 aa)
xab2XPA binding protein 2. (849 aa)
ctnnbl1Catenin, beta like 1. (577 aa)
ENSPNYP00000019900Uncharacterized protein. (164 aa)
LOC102213887Si:ch211-114c17.1. (646 aa)
wdr83WD repeat domain containing 83. (317 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (311 aa)
ccdc130Coiled-coil domain containing 130. (401 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (950 aa)
ube2j1Ubiquitin-conjugating enzyme E2, J1. (317 aa)
ccdc12Coiled-coil domain containing 12. (163 aa)
mthfsdMethenyltetrahydrofolate synthetase domain containing. (396 aa)
aqrAquarius intron-binding spliceosomal factor. (1472 aa)
ENSPNYP00000022113Si:zfos-375h5.1. (200 aa)
UPF1UPF1 RNA helicase and ATPase. (1101 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
LOC102193563GC-rich sequence DNA-binding factor 2. (783 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
ENSPNYP00000023738LUC7-like (S. cerevisiae). (260 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
gpatch1G patch domain containing 1. (889 aa)
uhrf1bp1UHRF1 binding protein 1. (1328 aa)
bud31BUD31 homolog. (134 aa)
sf3a1Splicing factor 3a, subunit 1. (784 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
WDR25WD repeat domain 25. (503 aa)
cwc15CWC15 spliceosome associated protein homolog. (237 aa)
EFL1Elongation factor like GTPase 1. (1067 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (498 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSPNYP00000029188RED_C domain-containing protein. (160 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
sf3b2Splicing factor 3b, subunit 2. (740 aa)
ENSPNYP00000031633Cir_N domain-containing protein. (125 aa)
LOC102202464Zgc:158803. (433 aa)
ENSPNYP00000031925Slu7 domain-containing protein. (505 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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