12 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cd2bp2	CD2 (cytoplasmic tail) binding protein 2. (341 aa)
	prpf8	Pre-mRNA processing factor 8. (2333 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
	snrpd2	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	snrpd1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
	snrpg	Small nuclear ribonucleoprotein G. (76 aa)
	txnl4b	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	prpf18	PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
	txnl4a	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	snrpd3	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	snrpb	Small nuclear ribonucleoprotein-associated protein. (240 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cd2bp2	ddx23	ENSPNYP00000018828	ENSPNYP00000027966	CD2 (cytoplasmic tail) binding protein 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.955
cd2bp2	prpf8	ENSPNYP00000018828	ENSPNYP00000021743	CD2 (cytoplasmic tail) binding protein 2.	Pre-mRNA processing factor 8.	0.955
cd2bp2	snrnp200	ENSPNYP00000018828	ENSPNYP00000023255	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein 200 (U5).	0.991
cd2bp2	snrpb	ENSPNYP00000018828	ENSPNYP00000019566	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein-associated protein.	0.902
cd2bp2	snrpd1	ENSPNYP00000018828	ENSPNYP00000014413	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.758
cd2bp2	snrpd2	ENSPNYP00000018828	ENSPNYP00000015609	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein Sm D2.	0.737
cd2bp2	snrpd3	ENSPNYP00000018828	ENSPNYP00000017633	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein Sm D3.	0.480
cd2bp2	snrpg	ENSPNYP00000018828	ENSPNYP00000011810	CD2 (cytoplasmic tail) binding protein 2.	Small nuclear ribonucleoprotein G.	0.519
cd2bp2	txnl4a	ENSPNYP00000018828	ENSPNYP00000001319	CD2 (cytoplasmic tail) binding protein 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.972
cd2bp2	txnl4b	ENSPNYP00000018828	ENSPNYP00000004663	CD2 (cytoplasmic tail) binding protein 2.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.936
ddx23	cd2bp2	ENSPNYP00000027966	ENSPNYP00000018828	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	CD2 (cytoplasmic tail) binding protein 2.	0.955
ddx23	prpf18	ENSPNYP00000027966	ENSPNYP00000004596	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	PRP18 pre-mRNA processing factor 18 homolog (yeast).	0.727
ddx23	prpf8	ENSPNYP00000027966	ENSPNYP00000021743	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Pre-mRNA processing factor 8.	0.999
ddx23	snrnp200	ENSPNYP00000027966	ENSPNYP00000023255	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein 200 (U5).	0.996
ddx23	snrpb	ENSPNYP00000027966	ENSPNYP00000019566	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein-associated protein.	0.964
ddx23	snrpd1	ENSPNYP00000027966	ENSPNYP00000014413	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.987
ddx23	snrpd2	ENSPNYP00000027966	ENSPNYP00000015609	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein Sm D2.	0.987
ddx23	snrpd3	ENSPNYP00000027966	ENSPNYP00000017633	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein Sm D3.	0.985
ddx23	snrpg	ENSPNYP00000027966	ENSPNYP00000011810	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Small nuclear ribonucleoprotein G.	0.985
ddx23	txnl4a	ENSPNYP00000027966	ENSPNYP00000001319	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.999