STRINGSTRING
snrpd3 snrpd3 yju2 yju2 shd shd rnf113a rnf113a xab2 xab2 LOC102213887 LOC102213887 sart3 sart3 aqr aqr eif4a3 eif4a3 LOC102193563 LOC102193563 snrnp200 snrnp200 tfip11 tfip11 uhrf1bp1 uhrf1bp1 dhx16 dhx16 cwc15 cwc15 EFL1 EFL1 ppil1 ppil1 ENSPNYP00000029188 ENSPNYP00000029188 snw1 snw1 zmat2 zmat2 rbm22 rbm22 paxbp1 paxbp1 u2af2 u2af2 crnkl1 crnkl1 prpf39 prpf39 SMU1 SMU1 prpf18 prpf18 sf3b3 sf3b3 mfap1 mfap1 wbp4 wbp4 ENSPNYP00000006193 ENSPNYP00000006193 SNRPC SNRPC cwc27 cwc27 prpf38a prpf38a LOC102198893 LOC102198893 ENSPNYP00000008031 ENSPNYP00000008031 ppie ppie sf3a2 sf3a2 ENSPNYP00000010244 ENSPNYP00000010244 ENSPNYP00000012475 ENSPNYP00000012475 snrnp40 snrnp40 cwc22 cwc22 snrpd1 snrpd1 LOC102199287 LOC102199287 eftud2 eftud2 SNIP1 SNIP1 ENSPNYP00000031633 ENSPNYP00000031633
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
yju2YJU2 splicing factor homolog. (340 aa)
shdSrc homology 2 domain containing transforming protein D, a. (406 aa)
rnf113aRing finger protein 113A. (322 aa)
xab2XPA binding protein 2. (849 aa)
LOC102213887Si:ch211-114c17.1. (646 aa)
sart3Spliceosome associated factor 3, U4/U6 recycling protein. (950 aa)
aqrAquarius intron-binding spliceosomal factor. (1472 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
LOC102193563GC-rich sequence DNA-binding factor 2. (783 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
tfip11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (830 aa)
uhrf1bp1UHRF1 binding protein 1. (1328 aa)
dhx16DEAH (Asp-Glu-Ala-His) box polypeptide 16. (970 aa)
cwc15CWC15 spliceosome associated protein homolog. (237 aa)
EFL1Elongation factor like GTPase 1. (1067 aa)
ppil1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
ENSPNYP00000029188RED_C domain-containing protein. (160 aa)
snw1SNW domain containing 1. (536 aa)
zmat2Zinc finger, matrin-type 2. (201 aa)
rbm22RNA binding motif protein 22. (363 aa)
paxbp1PAX3 and PAX7 binding protein 1. (891 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)
crnkl1Crooked neck pre-mRNA splicing factor 1. (755 aa)
prpf39PRP39 pre-mRNA processing factor 39 homolog (yeast). (778 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
mfap1Microfibril associated protein 1. (441 aa)
wbp4Uncharacterized protein. (416 aa)
ENSPNYP00000006193Uncharacterized protein. (73 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (134 aa)
cwc27CWC27 spliceosome associated cyclophilin. (450 aa)
prpf38aPre-mRNA processing factor 38A. (309 aa)
LOC102198893GCFC domain-containing protein. (238 aa)
ENSPNYP00000008031Cir_N domain-containing protein. (67 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (299 aa)
sf3a2Splicing factor 3a, subunit 2. (294 aa)
ENSPNYP00000010244Serine/arginine repetitive matrix 4. (444 aa)
ENSPNYP00000012475Cwf21 domain-containing protein. (187 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
cwc22CWC22 spliceosome associated protein homolog. (687 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
LOC102199287U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (466 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
SNIP1Smad nuclear interacting protein 1. (376 aa)
ENSPNYP00000031633Cir_N domain-containing protein. (125 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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