29 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPNYP00000022109	Uncharacterized protein. (106 aa)
	LOC102192408	Ribosomal protein S19. (155 aa)
	rps3a	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (266 aa)
	rps23	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	rps25	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
	RPS20	Ribosomal_S10 domain-containing protein. (119 aa)
	rps24	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	rps13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	LOC102194362	Ribosomal protein S17. (134 aa)
	mcts1	Malignant T-cell-amplified sequence. (183 aa)
	RPS19	Ribosomal protein S19. (140 aa)
	rps11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	rps6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (251 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1321 aa)
	ENSPNYP00000006682	Ribosomal_S10 domain-containing protein. (79 aa)
	rps2	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (279 aa)
	rps15	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (142 aa)
	rps28	Ribosomal protein S28. (69 aa)
	ENSPNYP00000003474	Uncharacterized protein. (80 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (135 aa)
	rpsa	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (370 aa)
	rps7	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (186 aa)
	rps18	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	LOC102200763	40S ribosomal protein S27. (84 aa)
	ENSPNYP00000025156	Uncharacterized protein. (82 aa)
	rps16	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
	LOC102196403	Uncharacterized protein. (134 aa)
	rps5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (203 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000003474	ENSPNYP00000006682	ENSPNYP00000003474	ENSPNYP00000006682	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.997
ENSPNYP00000003474	ENSPNYP00000022109	ENSPNYP00000003474	ENSPNYP00000022109	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSPNYP00000003474	ENSPNYP00000025156	ENSPNYP00000003474	ENSPNYP00000025156	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSPNYP00000003474	LOC102192408	ENSPNYP00000003474	ENSPNYP00000019434	Uncharacterized protein.	Ribosomal protein S19.	0.997
ENSPNYP00000003474	LOC102194362	ENSPNYP00000003474	ENSPNYP00000014276	Uncharacterized protein.	Ribosomal protein S17.	0.994
ENSPNYP00000003474	LOC102196403	ENSPNYP00000003474	ENSPNYP00000023628	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPNYP00000003474	LOC102200763	ENSPNYP00000003474	ENSPNYP00000029050	Uncharacterized protein.	40S ribosomal protein S27.	0.994
ENSPNYP00000003474	RPS19	ENSPNYP00000003474	ENSPNYP00000012897	Uncharacterized protein.	Ribosomal protein S19.	0.997
ENSPNYP00000003474	RPS20	ENSPNYP00000003474	ENSPNYP00000015247	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.997
ENSPNYP00000003474	fau	ENSPNYP00000003474	ENSPNYP00000002628	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
ENSPNYP00000003474	mcts1	ENSPNYP00000003474	ENSPNYP00000013319	Uncharacterized protein.	Malignant T-cell-amplified sequence.	0.743
ENSPNYP00000003474	rps11	ENSPNYP00000003474	ENSPNYP00000012276	Uncharacterized protein.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.999
ENSPNYP00000003474	rps13	ENSPNYP00000003474	ENSPNYP00000014310	Uncharacterized protein.	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.999
ENSPNYP00000003474	rps15	ENSPNYP00000003474	ENSPNYP00000004165	Uncharacterized protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
ENSPNYP00000003474	rps16	ENSPNYP00000003474	ENSPNYP00000024262	Uncharacterized protein.	Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.	0.997
ENSPNYP00000003474	rps18	ENSPNYP00000003474	ENSPNYP00000030795	Uncharacterized protein.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
ENSPNYP00000003474	rps2	ENSPNYP00000003474	ENSPNYP00000005304	Uncharacterized protein.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
ENSPNYP00000003474	rps23	ENSPNYP00000003474	ENSPNYP00000017433	Uncharacterized protein.	Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
ENSPNYP00000003474	rps24	ENSPNYP00000003474	ENSPNYP00000015163	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
ENSPNYP00000003474	rps25	ENSPNYP00000003474	ENSPNYP00000015319	Uncharacterized protein.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999