44 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rrp9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (482 aa)
	pin4	Peptidyl-prolyl cis-trans isomerase. (127 aa)
	imp3	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	LOC102213344	Uncharacterized protein. (680 aa)
	nsa2	NSA2 ribosome biogenesis homolog (S. cerevisiae). (260 aa)
	utp6	UTP6 small subunit processome component. (595 aa)
	riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (508 aa)
	riok1	RIO kinase 1 (yeast). (313 aa)
	fbxw12	Si:ch73-142c19.1. (474 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (679 aa)
	mak16	Protein MAK16 homolog; Belongs to the MAK16 family. (275 aa)
	wdr3	WD repeat domain 3. (911 aa)
	noc2l	NOC2-like nucleolar associated transcriptional repressor. (749 aa)
	bysl	Bystin-like. (435 aa)
	nop14	NOP14 nucleolar protein homolog (yeast). (862 aa)
	rrp15	Ribosomal RNA processing 15 homolog. (241 aa)
	bop1	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (679 aa)
	utp20	UTP20 small subunit processome component. (2794 aa)
	wdr36	WD repeat domain 36. (889 aa)
	cmss1	Cms1 ribosomal small subunit homolog. (272 aa)
	noc4l	Nucleolar complex associated 4 homolog. (530 aa)
	fbxw9	F-box and WD repeat domain containing 9. (574 aa)
	tsr1	TSR1 ribosome maturation factor. (828 aa)
	fam207a	Family with sequence similarity 207 member A. (253 aa)
	pes1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (563 aa)
	ENSPNYP00000023311	UTP18 small subunit processome component. (101 aa)
	utp23	UTP23 small subunit processome component. (254 aa)
	utp3	UTP3 small subunit processome component. (432 aa)
	nob1	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (480 aa)
	mrto4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (239 aa)
	riok2	RIO kinase 2 (yeast). (525 aa)
	wdr12	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (421 aa)
	imp4	IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
	nop9	Uncharacterized protein. (613 aa)
	rsl24d1	Ribosomal L24 domain containing 1. (164 aa)
	rrp7a	Ribosomal RNA processing 7 homolog A. (282 aa)
	nol10	Nucleolar protein 10. (725 aa)
	nol6	Nucleolar protein 6. (1138 aa)
	ENSPNYP00000029539	Uncharacterized protein. (247 aa)
	ENSPNYP00000029912	Si:ch211-197l9.5. (273 aa)
	UTP14C	UTP14C small subunit processome component. (775 aa)
	hunk	Hormonally up-regulated Neu-associated kinase. (602 aa)
	emg1	EMG1 N1-specific pseudouridine methyltransferase. (237 aa)
	ltv1	LTV1 ribosome biogenesis factor. (467 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000023311	ENSPNYP00000029539	ENSPNYP00000023311	ENSPNYP00000029539	UTP18 small subunit processome component.	Uncharacterized protein.	0.995
ENSPNYP00000023311	LOC102213344	ENSPNYP00000023311	ENSPNYP00000000558	UTP18 small subunit processome component.	Uncharacterized protein.	0.903
ENSPNYP00000023311	UTP14C	ENSPNYP00000023311	ENSPNYP00000030335	UTP18 small subunit processome component.	UTP14C small subunit processome component.	0.999
ENSPNYP00000023311	bop1	ENSPNYP00000023311	ENSPNYP00000014414	UTP18 small subunit processome component.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.947
ENSPNYP00000023311	bysl	ENSPNYP00000023311	ENSPNYP00000010314	UTP18 small subunit processome component.	Bystin-like.	0.999
ENSPNYP00000023311	emg1	ENSPNYP00000023311	ENSPNYP00000030741	UTP18 small subunit processome component.	EMG1 N1-specific pseudouridine methyltransferase.	0.995
ENSPNYP00000023311	imp3	ENSPNYP00000023311	ENSPNYP00000000417	UTP18 small subunit processome component.	IMP U3 small nucleolar ribonucleoprotein 3.	0.997
ENSPNYP00000023311	imp4	ENSPNYP00000023311	ENSPNYP00000025820	UTP18 small subunit processome component.	IMP U3 small nucleolar ribonucleoprotein 4.	0.998
ENSPNYP00000023311	ltv1	ENSPNYP00000023311	ENSPNYP00000031121	UTP18 small subunit processome component.	LTV1 ribosome biogenesis factor.	0.906
ENSPNYP00000023311	mak16	ENSPNYP00000023311	ENSPNYP00000006896	UTP18 small subunit processome component.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.799
ENSPNYP00000023311	mphosph10	ENSPNYP00000023311	ENSPNYP00000006875	UTP18 small subunit processome component.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.998
ENSPNYP00000023311	mrto4	ENSPNYP00000023311	ENSPNYP00000024738	UTP18 small subunit processome component.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.855
ENSPNYP00000023311	nob1	ENSPNYP00000023311	ENSPNYP00000024436	UTP18 small subunit processome component.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.880
ENSPNYP00000023311	noc2l	ENSPNYP00000023311	ENSPNYP00000008446	UTP18 small subunit processome component.	NOC2-like nucleolar associated transcriptional repressor.	0.904
ENSPNYP00000023311	noc4l	ENSPNYP00000023311	ENSPNYP00000018001	UTP18 small subunit processome component.	Nucleolar complex associated 4 homolog.	0.998
ENSPNYP00000023311	nol10	ENSPNYP00000023311	ENSPNYP00000027301	UTP18 small subunit processome component.	Nucleolar protein 10.	0.994
ENSPNYP00000023311	nol6	ENSPNYP00000023311	ENSPNYP00000027706	UTP18 small subunit processome component.	Nucleolar protein 6.	0.999
ENSPNYP00000023311	nop14	ENSPNYP00000023311	ENSPNYP00000010901	UTP18 small subunit processome component.	NOP14 nucleolar protein homolog (yeast).	0.999
ENSPNYP00000023311	nop9	ENSPNYP00000023311	ENSPNYP00000026080	UTP18 small subunit processome component.	Uncharacterized protein.	0.702
ENSPNYP00000023311	nsa2	ENSPNYP00000023311	ENSPNYP00000002577	UTP18 small subunit processome component.	NSA2 ribosome biogenesis homolog (S. cerevisiae).	0.403