33 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DDX41	DEAD-box helicase 41. (614 aa)
	rbm22	RNA binding motif protein 22. (363 aa)
	dhx35	DEAH-box helicase 35. (699 aa)
	crnkl1	Crooked neck pre-mRNA splicing factor 1. (755 aa)
	prpf4b	Pre-mRNA processing factor 4Bb. (1014 aa)
	hnrnpc	RRM domain-containing protein. (298 aa)
	ENSPNYP00000006596	PWI domain-containing protein. (238 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)
	mtrex	Mtr4 exosome RNA helicase. (1037 aa)
	cactin	Cactin. (731 aa)
	ppie	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (299 aa)
	ENSPNYP00000011626	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	ess2	Ess-2 splicing factor homolog. (476 aa)
	ENSPNYP00000012475	Cwf21 domain-containing protein. (187 aa)
	snrnp40	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	cwc22	CWC22 spliceosome associated protein homolog. (687 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (581 aa)
	eftud2	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	rbmx	RNA binding motif protein X-linked. (391 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1242 aa)
	xab2	XPA binding protein 2. (849 aa)
	wdr83	WD repeat domain containing 83. (317 aa)
	sart3	Spliceosome associated factor 3, U4/U6 recycling protein. (950 aa)
	mthfsd	Methenyltetrahydrofolate synthetase domain containing. (396 aa)
	aqr	Aquarius intron-binding spliceosomal factor. (1472 aa)
	snrnp200	Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
	gpatch1	G patch domain containing 1. (889 aa)
	WDR25	WD repeat domain 25. (503 aa)
	cwc15	CWC15 spliceosome associated protein homolog. (237 aa)
	EFL1	Elongation factor like GTPase 1. (1067 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	ddx23	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
	snw1	SNW domain containing 1. (536 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	ENSPNYP00000006596	ENSPNYP00000000285	ENSPNYP00000006596	DEAD-box helicase 41.	PWI domain-containing protein.	0.837
DDX41	ENSPNYP00000011626	ENSPNYP00000000285	ENSPNYP00000011626	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.677
DDX41	WDR25	ENSPNYP00000000285	ENSPNYP00000025036	DEAD-box helicase 41.	WD repeat domain 25.	0.692
DDX41	cdc40	ENSPNYP00000000285	ENSPNYP00000013891	DEAD-box helicase 41.	Cell division cycle 40 homolog (S. cerevisiae).	0.837
DDX41	cwc22	ENSPNYP00000000285	ENSPNYP00000013825	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.743
DDX41	ddx23	ENSPNYP00000000285	ENSPNYP00000027966	DEAD-box helicase 41.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.637
DDX41	dhx35	ENSPNYP00000000285	ENSPNYP00000002073	DEAD-box helicase 41.	DEAH-box helicase 35.	0.776
DDX41	dhx38	ENSPNYP00000000285	ENSPNYP00000017691	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.780
DDX41	gpatch1	ENSPNYP00000000285	ENSPNYP00000024121	DEAD-box helicase 41.	G patch domain containing 1.	0.663
DDX41	mtrex	ENSPNYP00000000285	ENSPNYP00000008099	DEAD-box helicase 41.	Mtr4 exosome RNA helicase.	0.763
DDX41	ppie	ENSPNYP00000000285	ENSPNYP00000008855	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.577
DDX41	ppil1	ENSPNYP00000000285	ENSPNYP00000026494	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.848
DDX41	ppwd1	ENSPNYP00000000285	ENSPNYP00000007159	DEAD-box helicase 41.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.875
EFL1	ENSPNYP00000006596	ENSPNYP00000025746	ENSPNYP00000006596	Elongation factor like GTPase 1.	PWI domain-containing protein.	0.442
EFL1	ENSPNYP00000011626	ENSPNYP00000025746	ENSPNYP00000011626	Elongation factor like GTPase 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.472
EFL1	ENSPNYP00000012475	ENSPNYP00000025746	ENSPNYP00000012475	Elongation factor like GTPase 1.	Cwf21 domain-containing protein.	0.711
EFL1	WDR25	ENSPNYP00000025746	ENSPNYP00000025036	Elongation factor like GTPase 1.	WD repeat domain 25.	0.765
EFL1	aqr	ENSPNYP00000025746	ENSPNYP00000022086	Elongation factor like GTPase 1.	Aquarius intron-binding spliceosomal factor.	0.867
EFL1	cdc40	ENSPNYP00000025746	ENSPNYP00000013891	Elongation factor like GTPase 1.	Cell division cycle 40 homolog (S. cerevisiae).	0.765
EFL1	crnkl1	ENSPNYP00000025746	ENSPNYP00000002537	Elongation factor like GTPase 1.	Crooked neck pre-mRNA splicing factor 1.	0.900