(46 nodes) SRCR-like domain superfamily network (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSPNYP00000002322	Uncharacterized protein. (349 aa)
	tmprss2	Transmembrane serine protease 2; Belongs to the peptidase S1 family. (503 aa)
	ENSPNYP00000032051	Uncharacterized protein. (295 aa)
	ENSPNYP00000031927	Uncharacterized protein. (436 aa)
	ENSPNYP00000031495	SRCR domain-containing protein. (146 aa)
	marco	SRCR domain-containing protein. (297 aa)
	prss12	Serine protease 12; Belongs to the peptidase S1 family. (729 aa)
	SCARA5	Scavenger receptor class A member 5. (492 aa)
	LOC102207980	Si:cabz01100188.1. (915 aa)
	ENSPNYP00000027942	Uncharacterized protein. (355 aa)
	ENSPNYP00000027149	Uncharacterized protein. (275 aa)
	ENSPNYP00000026204	Uncharacterized protein. (367 aa)
	LOC102195721	Zgc:112492. (590 aa)
	ENSPNYP00000025500	Uncharacterized protein. (1084 aa)
	LOC102208448	Uncharacterized protein; Belongs to the peptidase S1 family. (459 aa)
	HHIPL1	HHIP like 1. (801 aa)
	loxl3	Lysyl oxidase-like 3b. (759 aa)
	ENSPNYP00000022195	Uncharacterized protein. (527 aa)
	ENSPNYP00000021750	Uncharacterized protein. (323 aa)
	ENSPNYP00000020943	SRCR domain-containing protein. (128 aa)
	ENSPNYP00000020777	Transmembrane serine protease 5; Belongs to the peptidase S1 family. (398 aa)
	LOC102205744	Si:ch211-136a13.1. (775 aa)
	LOC102197826	Uncharacterized protein. (548 aa)
	hpn	Hepsin; Belongs to the peptidase S1 family. (427 aa)
	ENSPNYP00000017087	Uncharacterized protein. (943 aa)
	LOC102205573	Uncharacterized protein. (1003 aa)
	ENSPNYP00000016953	Uncharacterized protein. (320 aa)
	ENSPNYP00000016123	Uncharacterized protein. (339 aa)
	ENSPNYP00000016070	Uncharacterized protein. (731 aa)
	ENSPNYP00000014536	Uncharacterized protein. (474 aa)
	ENSPNYP00000014466	Uncharacterized protein. (608 aa)
	ENSPNYP00000014322	Uncharacterized protein. (319 aa)
	LOC102204933	Uncharacterized protein. (770 aa)
	ENSPNYP00000012798	Uncharacterized protein. (294 aa)
	LOC102199618	Uncharacterized protein; Belongs to the peptidase S1 family. (803 aa)
	LOC102214438	Lysyl oxidase-like 4. (742 aa)
	ENSPNYP00000010205	Uncharacterized protein. (1386 aa)
	LOC102201062	Uncharacterized protein. (584 aa)
	ENSPNYP00000008359	Uncharacterized protein. (498 aa)
	loxl2	Lysyl oxidase-like 2b. (766 aa)
	LOC102204103	Si:ch211-150o23.3. (359 aa)
	cfi	Uncharacterized protein; Belongs to the peptidase S1 family. (561 aa)
	LOC102212520	Lysyl oxidase-like 2a. (740 aa)
	LOC102207113	Uncharacterized protein; Belongs to the peptidase S1 family. (912 aa)
	ENSPNYP00000002707	SRCR domain-containing protein. (249 aa)
	ENSPNYP00000002331	SRCR domain-containing protein. (135 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000020777	LOC102208448	ENSPNYP00000020777	ENSPNYP00000024268	Transmembrane serine protease 5; Belongs to the peptidase S1 family.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.608
LOC102208448	ENSPNYP00000020777	ENSPNYP00000024268	ENSPNYP00000020777	Uncharacterized protein; Belongs to the peptidase S1 family.	Transmembrane serine protease 5; Belongs to the peptidase S1 family.	0.608
LOC102208448	tmprss2	ENSPNYP00000024268	ENSPNYP00000000710	Uncharacterized protein; Belongs to the peptidase S1 family.	Transmembrane serine protease 2; Belongs to the peptidase S1 family.	0.611
hpn	tmprss2	ENSPNYP00000018253	ENSPNYP00000000710	Hepsin; Belongs to the peptidase S1 family.	Transmembrane serine protease 2; Belongs to the peptidase S1 family.	0.433
tmprss2	LOC102208448	ENSPNYP00000000710	ENSPNYP00000024268	Transmembrane serine protease 2; Belongs to the peptidase S1 family.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.611
tmprss2	hpn	ENSPNYP00000000710	ENSPNYP00000018253	Transmembrane serine protease 2; Belongs to the peptidase S1 family.	Hepsin; Belongs to the peptidase S1 family.	0.433