STRINGSTRING
snrpb snrpb snrpd3 snrpd3 lsm12 lsm12 snrpe snrpe LOC102214963 LOC102214963 lsm7 lsm7 snrpg snrpg lsm3 lsm3 lsm14a lsm14a snrpd1 snrpd1 lsm8 lsm8 snrpd2 snrpd2 lsm6 lsm6 lsm11 lsm11 LSM10 LSM10 lsm5 lsm5 LOC102214302 LOC102214302 ENSPNYP00000028858 ENSPNYP00000028858 ENSPNYP00000028817 ENSPNYP00000028817 naa38 naa38 ENSPNYP00000025986 ENSPNYP00000025986 lsm2 lsm2 lsm1 lsm1 ENSPNYP00000022458 ENSPNYP00000022458 lsm4 lsm4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
lsm12LSM12 homolog b. (196 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
LOC102214963LSM14A mRNA processing body assembly factor a. (427 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (103 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
lsm14aLSM14A mRNA processing body assembly factor b. (382 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
lsm8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (81 aa)
lsm11LSM11, U7 small nuclear RNA associated. (334 aa)
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
lsm5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
LOC102214302Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
ENSPNYP00000028817LSM14 domain-containing protein. (106 aa)
naa38N(alpha)-acetyltransferase 38, NatC auxiliary subunit. (112 aa)
ENSPNYP00000025986LSM14 domain-containing protein. (133 aa)
lsm2Smx5. (140 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
ENSPNYP00000022458Ataxin 2. (491 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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