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polr2c polr2c polr2b polr2b txnl4a txnl4a LOC102202193 LOC102202193 gtf2f2 gtf2f2 prpf6 prpf6 sf3b5 sf3b5 NCBP1 NCBP1 ENSPNYP00000002790 ENSPNYP00000002790 snrnp70 snrnp70 sf3b3 sf3b3 snrpe snrpe srsf7 srsf7 YBX2 YBX2 polr2l polr2l snrnp25 snrnp25 zcrb1 zcrb1 zmat5 zmat5 snrpg snrpg snrnp40 snrnp40 ybx1 ybx1 snrpd1 snrpd1 snrpd2 snrpd2 polr2i polr2i polr2k polr2k eftud2 eftud2 gtf2f1 gtf2f1 sf3b4 sf3b4 LOC106456422 LOC106456422 snrpd3 snrpd3 ENSPNYP00000018434 ENSPNYP00000018434 ddx42 ddx42 snrpb snrpb polr2j polr2j sf3b1 sf3b1 snrnp48 snrnp48 ncbp2 ncbp2 ENSPNYP00000021049 ENSPNYP00000021049 polr2g polr2g prpf8 prpf8 LOC102197308 LOC102197308 snrnp200 snrnp200 zrsr2 zrsr2 polr2f polr2f POLR2E POLR2E ENSPNYP00000026924 ENSPNYP00000026924 polr2h polr2h rnpc3 rnpc3 LOC102203895 LOC102203895 ddx23 ddx23 ENSPNYP00000028858 ENSPNYP00000028858 sf3b6 sf3b6 polr2a polr2a polr2d polr2d sf3b2 sf3b2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LOC102202193Serine and arginine rich splicing factor 2a. (225 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (270 aa)
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (892 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
NCBP1Nuclear cap binding protein subunit 1. (719 aa)
ENSPNYP00000002790Uncharacterized protein. (55 aa)
snrnp70Small nuclear ribonucleoprotein 70 (U1). (475 aa)
sf3b3Splicing factor 3b, subunit 3. (1217 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
srsf7Serine and arginine rich splicing factor 7a. (254 aa)
YBX2Y-box binding protein 2. (343 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
snrnp25Small nuclear ribonucleoprotein 25. (185 aa)
zcrb1Zinc finger CCHC-type and RNA binding motif 1. (219 aa)
zmat5Zinc finger, matrin-type 5. (175 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
snrnp40Small nuclear ribonucleoprotein 40 (U5). (347 aa)
ybx1Y box binding protein 1. (300 aa)
snrpd1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (202 aa)
snrpd2Small nuclear ribonucleoprotein Sm D2. (118 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
eftud2Elongation factor Tu GTP binding domain containing 2. (971 aa)
gtf2f1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (542 aa)
sf3b4Splicing factor 3b, subunit 4. (401 aa)
LOC106456422RRM domain-containing protein. (216 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
ENSPNYP00000018434Uncharacterized protein. (144 aa)
ddx42DEAD (Asp-Glu-Ala-Asp) box helicase 42; Belongs to the DEAD box helicase family. (777 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (240 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
sf3b1Splicing factor 3b, subunit 1. (1311 aa)
snrnp48Small nuclear ribonucleoprotein 48 (U11/U12). (311 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
ENSPNYP00000021049General transcription factor IIF, polypeptide 2b. (162 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (172 aa)
prpf8Pre-mRNA processing factor 8. (2333 aa)
LOC102197308Uncharacterized protein. (264 aa)
snrnp200Small nuclear ribonucleoprotein 200 (U5). (2063 aa)
zrsr2Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (524 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
POLR2ERNA polymerase II subunit E. (198 aa)
ENSPNYP00000026924Uncharacterized protein. (370 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
rnpc3RNA-binding region (RNP1, RRM) containing 3. (498 aa)
LOC102203895Uncharacterized protein. (270 aa)
ddx23DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (832 aa)
ENSPNYP00000028858Small nuclear ribonucleoprotein polypeptide F. (85 aa)
sf3b6Splicing factor 3b, subunit 6. (125 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
polr2dRPOL4c domain-containing protein. (112 aa)
sf3b2Splicing factor 3b, subunit 2. (740 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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