39 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ube2a	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	LOC102195606	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2528 aa)
	aktip	Akt interacting protein. (295 aa)
	LOC102193536	Ubiquitin-conjugating enzyme E2Q family member 1. (373 aa)
	uchl3	Ubiquitin carboxyl-terminal hydrolase. (227 aa)
	LOC102210455	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (194 aa)
	ube2b	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	LOC102210761	Ubiquitin-conjugating enzyme E2E 2; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	LOC102199379	Ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (175 aa)
	ube2c	Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	ube2t	Ubiquitin-conjugating enzyme E2T (putative). (194 aa)
	uba52	Ubiquitin-like domain-containing protein. (128 aa)
	LOC106456278	Ubiquitin-like domain-containing protein. (122 aa)
	usp7	Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1112 aa)
	LOC102193714	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family. (163 aa)
	rps27a	Ribosomal protein S27a. (188 aa)
	ube2h	Ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	ube2g1	Ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (170 aa)
	LOC102211089	Ubiquitin-conjugating enzyme E2Q family member 2. (378 aa)
	LOC102204687	Cell division cycle 34 homolog (S. cerevisiae) a; Belongs to the ubiquitin-conjugating enzyme family. (243 aa)
	LOC102194068	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	ube2g2	Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (165 aa)
	LOC102203116	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (206 aa)
	LOC102203678	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family. (250 aa)
	uba6	Ubiquitin like modifier activating enzyme 6. (974 aa)
	ube2w	UBIQUITIN_CONJUGAT_2 domain-containing protein. (151 aa)
	LOC102203945	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (200 aa)
	ube2s	Ubiquitin-conjugating enzyme E2S; Belongs to the ubiquitin-conjugating enzyme family. (233 aa)
	LOC102208455	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	LOC102198909	OTU deubiquitinase with linear linkage specificity a. (735 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	ube2z	Ubiquitin-conjugating enzyme E2Z. (403 aa)
	ube2r2	Ubiquitin-conjugating enzyme E2R 2; Belongs to the ubiquitin-conjugating enzyme family. (260 aa)
	ENSPNYP00000005212	Ubiquitin-like domain-containing protein. (114 aa)
	ENSPNYP00000008382	Uncharacterized protein. (212 aa)
	ube2l3	Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	LOC102202342	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	ube2d3	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNYP00000005212	ENSPNYP00000008382	ENSPNYP00000005212	ENSPNYP00000008382	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.881
ENSPNYP00000005212	LOC102193714	ENSPNYP00000005212	ENSPNYP00000026109	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	0.834
ENSPNYP00000005212	LOC102194068	ENSPNYP00000005212	ENSPNYP00000030672	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.934
ENSPNYP00000005212	LOC102195606	ENSPNYP00000005212	ENSPNYP00000014252	Ubiquitin-like domain-containing protein.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.656
ENSPNYP00000005212	LOC102198909	ENSPNYP00000005212	ENSPNYP00000002478	Ubiquitin-like domain-containing protein.	OTU deubiquitinase with linear linkage specificity a.	0.904
ENSPNYP00000005212	LOC102199379	ENSPNYP00000005212	ENSPNYP00000016985	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.892
ENSPNYP00000005212	LOC102202342	ENSPNYP00000005212	ENSPNYP00000010072	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.892
ENSPNYP00000005212	LOC102203116	ENSPNYP00000005212	ENSPNYP00000001003	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.796
ENSPNYP00000005212	LOC102203678	ENSPNYP00000005212	ENSPNYP00000001044	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family.	0.796
ENSPNYP00000005212	LOC102203945	ENSPNYP00000005212	ENSPNYP00000001686	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.	0.934
ENSPNYP00000005212	LOC102204687	ENSPNYP00000005212	ENSPNYP00000029403	Ubiquitin-like domain-containing protein.	Cell division cycle 34 homolog (S. cerevisiae) a; Belongs to the ubiquitin-conjugating enzyme family.	0.881
ENSPNYP00000005212	LOC102208455	ENSPNYP00000005212	ENSPNYP00000002355	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.657
ENSPNYP00000005212	LOC102210455	ENSPNYP00000005212	ENSPNYP00000016554	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.796
ENSPNYP00000005212	LOC102210761	ENSPNYP00000005212	ENSPNYP00000016572	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2E 2; Belongs to the ubiquitin-conjugating enzyme family.	0.796
ENSPNYP00000005212	UBE2D1	ENSPNYP00000005212	ENSPNYP00000003602	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family.	0.830
ENSPNYP00000005212	rps27a	ENSPNYP00000005212	ENSPNYP00000026531	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.996
ENSPNYP00000005212	uba6	ENSPNYP00000005212	ENSPNYP00000001126	Ubiquitin-like domain-containing protein.	Ubiquitin like modifier activating enzyme 6.	0.907
ENSPNYP00000005212	ube2a	ENSPNYP00000005212	ENSPNYP00000012757	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.834
ENSPNYP00000005212	ube2b	ENSPNYP00000005212	ENSPNYP00000016557	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.834
ENSPNYP00000005212	ube2c	ENSPNYP00000005212	ENSPNYP00000019607	Ubiquitin-like domain-containing protein.	Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family.	0.814