(7 nodes) Ubiquitin-like autophagy protein Apg12 network (Pundamilia nyererei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC106455903	GABA type A receptor associated protein like 2. (121 aa)
	gabarap	GABA(A) receptor-associated protein b. (122 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
	gabarapl2	GABA(A) receptor-associated protein like 2. (117 aa)
	LOC102208502	Zgc:92606. (117 aa)
	map1lc3b	Microtubule-associated protein 1 light chain 3 beta. (126 aa)
	map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (122 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102208502	LOC106455903	ENSPNYP00000030857	ENSPNYP00000025585	Zgc:92606.	GABA type A receptor associated protein like 2.	0.829
LOC102208502	atg12	ENSPNYP00000030857	ENSPNYP00000001628	Zgc:92606.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.946
LOC102208502	gabarap	ENSPNYP00000030857	ENSPNYP00000008586	Zgc:92606.	GABA(A) receptor-associated protein b.	0.853
LOC102208502	gabarapl2	ENSPNYP00000030857	ENSPNYP00000005152	Zgc:92606.	GABA(A) receptor-associated protein like 2.	0.829
LOC106455903	LOC102208502	ENSPNYP00000025585	ENSPNYP00000030857	GABA type A receptor associated protein like 2.	Zgc:92606.	0.829
LOC106455903	atg12	ENSPNYP00000025585	ENSPNYP00000001628	GABA type A receptor associated protein like 2.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.947
LOC106455903	gabarap	ENSPNYP00000025585	ENSPNYP00000008586	GABA type A receptor associated protein like 2.	GABA(A) receptor-associated protein b.	0.826
LOC106455903	map1lc3a	ENSPNYP00000025585	ENSPNYP00000025752	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 alpha.	0.811
LOC106455903	map1lc3b	ENSPNYP00000025585	ENSPNYP00000029290	GABA type A receptor associated protein like 2.	Microtubule-associated protein 1 light chain 3 beta.	0.812
atg12	LOC102208502	ENSPNYP00000001628	ENSPNYP00000030857	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Zgc:92606.	0.946
atg12	LOC106455903	ENSPNYP00000001628	ENSPNYP00000025585	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	GABA type A receptor associated protein like 2.	0.947
atg12	gabarap	ENSPNYP00000001628	ENSPNYP00000008586	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	GABA(A) receptor-associated protein b.	0.957
atg12	gabarapl2	ENSPNYP00000001628	ENSPNYP00000005152	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	GABA(A) receptor-associated protein like 2.	0.947
atg12	map1lc3a	ENSPNYP00000001628	ENSPNYP00000025752	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated protein 1 light chain 3 alpha.	0.893
atg12	map1lc3b	ENSPNYP00000001628	ENSPNYP00000029290	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated protein 1 light chain 3 beta.	0.893
gabarap	LOC102208502	ENSPNYP00000008586	ENSPNYP00000030857	GABA(A) receptor-associated protein b.	Zgc:92606.	0.853
gabarap	LOC106455903	ENSPNYP00000008586	ENSPNYP00000025585	GABA(A) receptor-associated protein b.	GABA type A receptor associated protein like 2.	0.826
gabarap	atg12	ENSPNYP00000008586	ENSPNYP00000001628	GABA(A) receptor-associated protein b.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.957
gabarap	gabarapl2	ENSPNYP00000008586	ENSPNYP00000005152	GABA(A) receptor-associated protein b.	GABA(A) receptor-associated protein like 2.	0.825
gabarap	map1lc3a	ENSPNYP00000008586	ENSPNYP00000025752	GABA(A) receptor-associated protein b.	Microtubule-associated protein 1 light chain 3 alpha.	0.812