17 items (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tnpo3	Transportin 3. (923 aa)
	LOC102204899	Si:ch73-182a11.2. (968 aa)
	xpo1	Exportin 1 (CRM1 homolog, yeast) a. (1066 aa)
	ipo4	Importin 4. (1077 aa)
	ipo8	Importin 8. (1015 aa)
	kpnb1	Karyopherin (importin) beta 1. (916 aa)
	ipo11	Importin 11. (923 aa)
	tnpo2	Transportin 2 (importin 3, karyopherin beta 2b). (889 aa)
	LOC102192504	Importin N-terminal domain-containing protein. (864 aa)
	ipo9	Importin 9. (914 aa)
	xpo5	Exportin 5. (1139 aa)
	ipo7	Importin 7. (1039 aa)
	xpo6	Exportin 6. (1152 aa)
	LOC102197282	Importin 13. (961 aa)
	cse1l	CSE1 chromosome segregation 1-like (yeast). (971 aa)
	xpo7	Exportin 7. (1075 aa)
	tnpo1	Transportin 1. (891 aa)

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102192504	cse1l	ENSPNYP00000001602	ENSPNYP00000009379	Importin N-terminal domain-containing protein.	CSE1 chromosome segregation 1-like (yeast).	0.452
LOC102192504	ipo4	ENSPNYP00000001602	ENSPNYP00000028522	Importin N-terminal domain-containing protein.	Importin 4.	0.816
LOC102192504	ipo7	ENSPNYP00000001602	ENSPNYP00000011310	Importin N-terminal domain-containing protein.	Importin 7.	0.623
LOC102192504	ipo8	ENSPNYP00000001602	ENSPNYP00000027488	Importin N-terminal domain-containing protein.	Importin 8.	0.623
LOC102192504	ipo9	ENSPNYP00000001602	ENSPNYP00000017443	Importin N-terminal domain-containing protein.	Importin 9.	0.511
LOC102192504	kpnb1	ENSPNYP00000001602	ENSPNYP00000023491	Importin N-terminal domain-containing protein.	Karyopherin (importin) beta 1.	0.628
LOC102192504	tnpo3	ENSPNYP00000001602	ENSPNYP00000003081	Importin N-terminal domain-containing protein.	Transportin 3.	0.512
LOC102192504	xpo1	ENSPNYP00000001602	ENSPNYP00000031114	Importin N-terminal domain-containing protein.	Exportin 1 (CRM1 homolog, yeast) a.	0.522
LOC102192504	xpo5	ENSPNYP00000001602	ENSPNYP00000016801	Importin N-terminal domain-containing protein.	Exportin 5.	0.490
LOC102192504	xpo6	ENSPNYP00000001602	ENSPNYP00000011120	Importin N-terminal domain-containing protein.	Exportin 6.	0.434
LOC102192504	xpo7	ENSPNYP00000001602	ENSPNYP00000004459	Importin N-terminal domain-containing protein.	Exportin 7.	0.407
LOC102197282	cse1l	ENSPNYP00000009460	ENSPNYP00000009379	Importin 13.	CSE1 chromosome segregation 1-like (yeast).	0.431
LOC102197282	ipo11	ENSPNYP00000009460	ENSPNYP00000020404	Importin 13.	Importin 11.	0.483
LOC102197282	ipo4	ENSPNYP00000009460	ENSPNYP00000028522	Importin 13.	Importin 4.	0.567
LOC102197282	ipo9	ENSPNYP00000009460	ENSPNYP00000017443	Importin 13.	Importin 9.	0.578
LOC102197282	kpnb1	ENSPNYP00000009460	ENSPNYP00000023491	Importin 13.	Karyopherin (importin) beta 1.	0.422
LOC102197282	tnpo3	ENSPNYP00000009460	ENSPNYP00000003081	Importin 13.	Transportin 3.	0.426
LOC102197282	xpo5	ENSPNYP00000009460	ENSPNYP00000016801	Importin 13.	Exportin 5.	0.500
LOC102197282	xpo7	ENSPNYP00000009460	ENSPNYP00000004459	Importin 13.	Exportin 7.	0.412
LOC102204899	cse1l	ENSPNYP00000000912	ENSPNYP00000009379	Si:ch73-182a11.2.	CSE1 chromosome segregation 1-like (yeast).	0.431