STRINGSTRING
crispld1 crispld1 LOC102195724 LOC102195724 ENSPNYP00000000829 ENSPNYP00000000829 ENSPNYP00000002823 ENSPNYP00000002823 apex1 apex1 ENSPNYP00000031424 ENSPNYP00000031424 ENSPNYP00000031418 ENSPNYP00000031418 LOC102208173 LOC102208173 r3hdml r3hdml ENSPNYP00000029339 ENSPNYP00000029339 gen1 gen1 prkrip1 prkrip1 pole4 pole4 ENSPNYP00000028489 ENSPNYP00000028489 neil3 neil3 smug1 smug1 mecp2 mecp2 pold2 pold2 LOC102197487 LOC102197487 pole2 pole2 LOC102213627 LOC102213627 pole pole LOC102209807 LOC102209807 pold3 pold3 ung ung apex2 apex2 parp4 parp4 ENSPNYP00000020167 ENSPNYP00000020167 LOC102206353 LOC102206353 cachd1 cachd1 crispld2 crispld2 xrcc1 xrcc1 neil1 neil1 lig3 lig3 LOC102211219 LOC102211219 ENSPNYP00000015803 ENSPNYP00000015803 ENSPNYP00000015354 ENSPNYP00000015354 chrac1 chrac1 LOC102212614 LOC102212614 LOC102211387 LOC102211387 LOC102195704 LOC102195704 parp1 parp1 pcna pcna LOC102193700 LOC102193700 ENSPNYP00000011626 ENSPNYP00000011626 pold1 pold1 LOC102194415 LOC102194415 polb polb pold4 pold4 mpg mpg GTF3C1 GTF3C1 MUTYH MUTYH LOC102193308 LOC102193308 parp3 parp3 ENSPNYP00000007937 ENSPNYP00000007937 mbd4 mbd4 ogg1 ogg1 MGMT MGMT LOC102192339 LOC102192339 mbd2 mbd2 poll poll parp2 parp2 fen1 fen1 pole3 pole3 ENSPNYP00000003378 ENSPNYP00000003378 ENSPNYP00000002817 ENSPNYP00000002817 lig1 lig1 hmgb2 hmgb2 mettl4 mettl4 NTHL1 NTHL1 adat2 adat2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
crispld1Cysteine-rich secretory protein LCCL domain containing 1a. (482 aa)
LOC102195724Zgc:110269. (323 aa)
ENSPNYP00000000829Uncharacterized protein. (237 aa)
ENSPNYP00000002823Endo/exonuclease/phosphatase domain-containing protein. (190 aa)
apex1DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (310 aa)
ENSPNYP00000031424Uncharacterized protein. (208 aa)
ENSPNYP00000031418HMG box domain-containing protein. (61 aa)
LOC102208173Si:dkey-117m1.4. (834 aa)
r3hdmlR3H domain containing-like. (253 aa)
ENSPNYP00000029339Uncharacterized protein. (213 aa)
gen1Chromo_2 domain-containing protein. (640 aa)
prkrip1PRKR interacting protein 1. (193 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (129 aa)
ENSPNYP00000028489Uncharacterized protein. (352 aa)
neil3Nei-like DNA glycosylase 3. (558 aa)
smug1Single-strand-selective monofunctional uracil-DNA glycosylase 1. (289 aa)
mecp2MBD domain-containing protein. (1059 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (471 aa)
LOC102197487LisH domain-containing protein. (821 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (509 aa)
LOC102213627Methyl-CpG binding domain protein 3a. (274 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2015 aa)
LOC102209807Calcium binding protein 5a. (178 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (443 aa)
ungUracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (300 aa)
apex2DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (561 aa)
parp4Poly [ADP-ribose] polymerase. (1908 aa)
ENSPNYP00000020167Uncharacterized protein. (424 aa)
LOC102206353High mobility group box 1a. (206 aa)
cachd1Cache domain containing 1. (975 aa)
crispld2Cysteine-rich secretory protein LCCL domain containing 2. (518 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (627 aa)
neil1Nei-like DNA glycosylase 1. (423 aa)
lig3DNA ligase. (1012 aa)
LOC102211219High mobility group box 1b. (201 aa)
ENSPNYP00000015803HMG box domain-containing protein. (180 aa)
ENSPNYP00000015354Uncharacterized protein. (226 aa)
chrac1Chromatin accessibility complex subunit 1. (125 aa)
LOC102212614Thymine DNA glycosylase, tandem duplicate 1. (390 aa)
LOC102211387Thymine DNA glycosylase, tandem duplicate 2. (407 aa)
LOC102195704Cysteine-rich secretory protein LCCL domain containing 1b. (499 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (999 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
LOC102193700Von Willebrand factor A domain containing 5B2. (1035 aa)
ENSPNYP00000011626Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
pold1DNA polymerase. (1105 aa)
LOC102194415Uncharacterized protein. (161 aa)
polbDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (336 aa)
pold4Si:dkey-28b4.7. (107 aa)
mpgN-methylpurine DNA glycosylase. (278 aa)
GTF3C1General transcription factor IIIC subunit 1. (2093 aa)
MUTYHAdenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (539 aa)
LOC102193308Uncharacterized protein. (239 aa)
parp3Poly [ADP-ribose] polymerase. (532 aa)
ENSPNYP00000007937Uncharacterized protein. (332 aa)
mbd4Methyl-CpG binding domain protein 4. (175 aa)
ogg18-oxoguanine DNA glycosylase. (416 aa)
MGMTO-6-methylguanine-DNA methyltransferase. (210 aa)
LOC102192339Si:ch211-141o9.10. (290 aa)
mbd2Methyl-CpG binding domain protein 2. (261 aa)
pollPolymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family. (597 aa)
parp2Poly [ADP-ribose] polymerase. (641 aa)
fen1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (150 aa)
ENSPNYP00000003378Reverse transcriptase domain-containing protein. (383 aa)
ENSPNYP00000002817Endo/exonuclease/phosphatase domain-containing protein. (329 aa)
lig1DNA ligase. (1012 aa)
hmgb2High mobility group box 2a. (213 aa)
mettl4Methyltransferase like 4; Belongs to the MT-A70-like family. (439 aa)
NTHL1Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (305 aa)
adat2CMP/dCMP-type deaminase domain-containing protein. (211 aa)
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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