7 items (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_05132	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	N306_13958	DNA-directed RNA polymerase II subunit RPB4. (118 aa)
	N306_06276	DNA-directed RNA polymerase II subunit RPB3. (248 aa)
	N306_06871	DNA-directed RNA polymerase II subunit RPB11-a. (90 aa)
	N306_05639	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	N306_02835	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1154 aa)
	N306_00925	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (95 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_00925	N306_02835	A0A091XJD4	A0A091XHG2	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
N306_00925	N306_05132	A0A091XJD4	A0A091VT23	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
N306_00925	N306_05639	A0A091XJD4	A0A091WD55	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
N306_00925	N306_06276	A0A091XJD4	A0A091W3D5	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB3.	0.999
N306_00925	N306_06871	A0A091XJD4	A0A091WBH5	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB11-a.	0.999
N306_00925	N306_13958	A0A091XJD4	A0A091W1Z1	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB4.	0.999
N306_02835	N306_00925	A0A091XHG2	A0A091XJD4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
N306_02835	N306_05132	A0A091XHG2	A0A091VT23	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
N306_02835	N306_05639	A0A091XHG2	A0A091WD55	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
N306_02835	N306_06276	A0A091XHG2	A0A091W3D5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3.	0.999
N306_02835	N306_06871	A0A091XHG2	A0A091WBH5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB11-a.	0.999
N306_02835	N306_13958	A0A091XHG2	A0A091W1Z1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB4.	0.999
N306_05132	N306_00925	A0A091VT23	A0A091XJD4	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
N306_05132	N306_02835	A0A091VT23	A0A091XHG2	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
N306_05132	N306_05639	A0A091VT23	A0A091WD55	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.999
N306_05132	N306_06276	A0A091VT23	A0A091W3D5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB3.	0.999
N306_05132	N306_06871	A0A091VT23	A0A091WBH5	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB11-a.	0.999
N306_05132	N306_13958	A0A091VT23	A0A091W1Z1	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB4.	0.999
N306_05639	N306_00925	A0A091WD55	A0A091XJD4	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
N306_05639	N306_02835	A0A091WD55	A0A091XHG2	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999