(12 nodes) Mixed, incl. Cdc73/Paf1 complex, and HULC complex network (Opisthocomus hoazin)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_00242	RNA polymerase-associated protein CTR9. (1152 aa)
	N306_10435	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family. (146 aa)
	N306_01131	E3 ubiquitin protein ligase. (982 aa)
	N306_01166	Dentin matrix acidic phosphoprotein 1. (136 aa)
	N306_07805	WD repeat, SAM and U-box domain-containing protein 1. (476 aa)
	N306_01167	Bone sialoprotein 2. (294 aa)
	N306_08069	RNA polymerase-associated protein RTF1. (622 aa)
	N306_03521	DDB1-and CUL4-associated factor 10. (382 aa)
	N306_04649	Cyclin-dependent kinase 2-interacting protein. (209 aa)
	N306_01447	Parafibromin. (486 aa)
	N306_15293	RNA polymerase-associated protein LEO1. (637 aa)
	N306_02267	Transcription elongation factor B polypeptide 3. (754 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_00242	N306_01131	A0A091V5E4	A0A091VSW9	RNA polymerase-associated protein CTR9.	E3 ubiquitin protein ligase.	0.840
N306_00242	N306_01166	A0A091V5E4	A0A091VXR0	RNA polymerase-associated protein CTR9.	Dentin matrix acidic phosphoprotein 1.	0.738
N306_00242	N306_01167	A0A091V5E4	A0A091VYW2	RNA polymerase-associated protein CTR9.	Bone sialoprotein 2.	0.738
N306_00242	N306_01447	A0A091V5E4	A0A091WH85	RNA polymerase-associated protein CTR9.	Parafibromin.	0.999
N306_00242	N306_02267	A0A091V5E4	A0A091WN18	RNA polymerase-associated protein CTR9.	Transcription elongation factor B polypeptide 3.	0.829
N306_00242	N306_03521	A0A091V5E4	A0A091WAL5	RNA polymerase-associated protein CTR9.	DDB1-and CUL4-associated factor 10.	0.729
N306_00242	N306_07805	A0A091V5E4	A0A091VYS8	RNA polymerase-associated protein CTR9.	WD repeat, SAM and U-box domain-containing protein 1.	0.729
N306_00242	N306_08069	A0A091V5E4	A0A091W1L8	RNA polymerase-associated protein CTR9.	RNA polymerase-associated protein RTF1.	0.997
N306_00242	N306_10435	A0A091V5E4	A0A091VGB9	RNA polymerase-associated protein CTR9.	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family.	0.662
N306_00242	N306_15293	A0A091V5E4	A0A091WJ73	RNA polymerase-associated protein CTR9.	RNA polymerase-associated protein LEO1.	0.999
N306_01131	N306_00242	A0A091VSW9	A0A091V5E4	E3 ubiquitin protein ligase.	RNA polymerase-associated protein CTR9.	0.840
N306_01131	N306_01166	A0A091VSW9	A0A091VXR0	E3 ubiquitin protein ligase.	Dentin matrix acidic phosphoprotein 1.	0.425
N306_01131	N306_01167	A0A091VSW9	A0A091VYW2	E3 ubiquitin protein ligase.	Bone sialoprotein 2.	0.425
N306_01131	N306_01447	A0A091VSW9	A0A091WH85	E3 ubiquitin protein ligase.	Parafibromin.	0.898
N306_01131	N306_03521	A0A091VSW9	A0A091WAL5	E3 ubiquitin protein ligase.	DDB1-and CUL4-associated factor 10.	0.466
N306_01131	N306_04649	A0A091VSW9	A0A091WAM7	E3 ubiquitin protein ligase.	Cyclin-dependent kinase 2-interacting protein.	0.751
N306_01131	N306_07805	A0A091VSW9	A0A091VYS8	E3 ubiquitin protein ligase.	WD repeat, SAM and U-box domain-containing protein 1.	0.466
N306_01131	N306_08069	A0A091VSW9	A0A091W1L8	E3 ubiquitin protein ligase.	RNA polymerase-associated protein RTF1.	0.706
N306_01131	N306_10435	A0A091VSW9	A0A091VGB9	E3 ubiquitin protein ligase.	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family.	0.952
N306_01131	N306_15293	A0A091VSW9	A0A091WJ73	E3 ubiquitin protein ligase.	RNA polymerase-associated protein LEO1.	0.993