(15 nodes) Regulation of dopamine secretion network (Opisthocomus hoazin)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_02843	Alpha-synuclein; Belongs to the synuclein family. (143 aa)
	N306_08595	Synaptotagmin-9. (442 aa)
	N306_02513	Gamma-synuclein; Belongs to the synuclein family. (97 aa)
	N306_01201	Synaptotagmin-11. (418 aa)
	N306_12223	Metabotropic glutamate receptor 2. (775 aa)
	N306_07557	Protein kinase domain-containing protein. (451 aa)
	N306_10205	Synaptotagmin-2. (404 aa)
	N306_13007	Synaptotagmin-4. (414 aa)
	N306_15162	Synaptotagmin-13. (429 aa)
	N306_02214	Synaptotagmin-12. (340 aa)
	N306_12951	Synaptotagmin-10. (472 aa)
	N306_07252	Synaptotagmin-17. (464 aa)
	N306_10522	Synaptotagmin-1. (424 aa)
	N306_10702	Synaptotagmin-6. (441 aa)
	N306_09912	D(3) dopamine receptor; Belongs to the G-protein coupled receptor 1 family. (433 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_01201	N306_08595	A0A091W7A4	A0A091WB79	Synaptotagmin-11.	Synaptotagmin-9.	0.556
N306_01201	N306_10205	A0A091W7A4	A0A091WNU9	Synaptotagmin-11.	Synaptotagmin-2.	0.753
N306_01201	N306_10522	A0A091W7A4	A0A091WHN1	Synaptotagmin-11.	Synaptotagmin-1.	0.753
N306_02513	N306_07557	A0A091W7L0	A0A091WN25	Gamma-synuclein; Belongs to the synuclein family.	Protein kinase domain-containing protein.	0.501
N306_02843	N306_07557	A0A091WCU5	A0A091WN25	Alpha-synuclein; Belongs to the synuclein family.	Protein kinase domain-containing protein.	0.648
N306_07557	N306_02513	A0A091WN25	A0A091W7L0	Protein kinase domain-containing protein.	Gamma-synuclein; Belongs to the synuclein family.	0.501
N306_07557	N306_02843	A0A091WN25	A0A091WCU5	Protein kinase domain-containing protein.	Alpha-synuclein; Belongs to the synuclein family.	0.648
N306_08595	N306_01201	A0A091WB79	A0A091W7A4	Synaptotagmin-9.	Synaptotagmin-11.	0.556
N306_08595	N306_10205	A0A091WB79	A0A091WNU9	Synaptotagmin-9.	Synaptotagmin-2.	0.603
N306_08595	N306_10522	A0A091WB79	A0A091WHN1	Synaptotagmin-9.	Synaptotagmin-1.	0.603
N306_08595	N306_13007	A0A091WB79	A0A091WMC9	Synaptotagmin-9.	Synaptotagmin-4.	0.556
N306_10205	N306_01201	A0A091WNU9	A0A091W7A4	Synaptotagmin-2.	Synaptotagmin-11.	0.753
N306_10205	N306_08595	A0A091WNU9	A0A091WB79	Synaptotagmin-2.	Synaptotagmin-9.	0.603
N306_10205	N306_13007	A0A091WNU9	A0A091WMC9	Synaptotagmin-2.	Synaptotagmin-4.	0.753
N306_10522	N306_01201	A0A091WHN1	A0A091W7A4	Synaptotagmin-1.	Synaptotagmin-11.	0.753
N306_10522	N306_08595	A0A091WHN1	A0A091WB79	Synaptotagmin-1.	Synaptotagmin-9.	0.603
N306_10522	N306_13007	A0A091WHN1	A0A091WMC9	Synaptotagmin-1.	Synaptotagmin-4.	0.761
N306_13007	N306_08595	A0A091WMC9	A0A091WB79	Synaptotagmin-4.	Synaptotagmin-9.	0.556
N306_13007	N306_10205	A0A091WMC9	A0A091WNU9	Synaptotagmin-4.	Synaptotagmin-2.	0.753
N306_13007	N306_10522	A0A091WMC9	A0A091WHN1	Synaptotagmin-4.	Synaptotagmin-1.	0.761