35 items (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_13194	Transcription initiation factor TFIID subunit 8. (277 aa)
	N306_09568	WD repeat-containing protein 47. (908 aa)
	N306_13356	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	N306_12153	General transcription factor IIH subunit 5. (59 aa)
	N306_00242	RNA polymerase-associated protein CTR9. (1152 aa)
	N306_01316	CDK-activating kinase assembly factor MAT1. (279 aa)
	N306_12279	Transcription initiation factor TFIID subunit 4B. (648 aa)
	N306_04649	Cyclin-dependent kinase 2-interacting protein. (209 aa)
	N306_06871	DNA-directed RNA polymerase II subunit RPB11-a. (90 aa)
	N306_12016	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L. (589 aa)
	N306_05639	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	N306_06339	Transcription initiation protein SPT3. (335 aa)
	N306_09898	Transcription initiation factor TFIID subunit 13. (96 aa)
	N306_01447	Parafibromin. (486 aa)
	N306_00543	General transcription factor IIE subunit 1. (418 aa)
	N306_15293	RNA polymerase-associated protein LEO1. (637 aa)
	N306_07046	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2. (570 aa)
	N306_05242	Peroxisome biogenesis factor 2. (303 aa)
	N306_08709	Transcription initiation factor TFIID subunit 1. (1859 aa)
	N306_11078	Regulation of nuclear pre-mRNA domain-containing protein 1A. (261 aa)
	N306_15237	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	N306_00925	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (95 aa)
	N306_10870	Transcription initiation factor IIA subunit 1. (368 aa)
	N306_06190	General transcription factor IIF subunit 2. (240 aa)
	N306_15258	WD repeat-containing protein 61. (301 aa)
	N306_11180	Cyclin-dependent kinase 7. (316 aa)
	N306_11181	Serine incorporator 5. (454 aa)
	N306_03378	Transcription initiation factor TFIID subunit 5. (622 aa)
	N306_04824	Transcription initiation factor TFIID subunit 3. (872 aa)
	N306_13158	General transcription factor IIH subunit 2. (384 aa)
	N306_00329	TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
	N306_02940	Regulation of nuclear pre-mRNA domain-containing protein 1B. (274 aa)
	N306_05936	Transcription initiation factor TFIID subunit 4. (259 aa)
	N306_06530	General transcription factor IIH subunit 3. (305 aa)
	N306_08069	RNA polymerase-associated protein RTF1. (622 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_00242	N306_00925	A0A091V5E4	A0A091XJD4	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.931
N306_00242	N306_01447	A0A091V5E4	A0A091WH85	RNA polymerase-associated protein CTR9.	Parafibromin.	0.999
N306_00242	N306_03378	A0A091V5E4	A0A091VC11	RNA polymerase-associated protein CTR9.	Transcription initiation factor TFIID subunit 5.	0.487
N306_00242	N306_05639	A0A091V5E4	A0A091WD55	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.919
N306_00242	N306_06871	A0A091V5E4	A0A091WBH5	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerase II subunit RPB11-a.	0.904
N306_00242	N306_08069	A0A091V5E4	A0A091W1L8	RNA polymerase-associated protein CTR9.	RNA polymerase-associated protein RTF1.	0.997
N306_00242	N306_11180	A0A091V5E4	A0A091V8Y5	RNA polymerase-associated protein CTR9.	Cyclin-dependent kinase 7.	0.417
N306_00242	N306_12016	A0A091V5E4	A0A091WCT2	RNA polymerase-associated protein CTR9.	TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L.	0.462
N306_00242	N306_15258	A0A091V5E4	A0A091XXL9	RNA polymerase-associated protein CTR9.	WD repeat-containing protein 61.	0.996
N306_00242	N306_15293	A0A091V5E4	A0A091WJ73	RNA polymerase-associated protein CTR9.	RNA polymerase-associated protein LEO1.	0.999
N306_00329	N306_00543	A0A091VE96	A0A091WII5	TFIIH basal transcription factor complex helicase XPB subunit.	General transcription factor IIE subunit 1.	0.958
N306_00329	N306_00925	A0A091VE96	A0A091XJD4	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.979
N306_00329	N306_01316	A0A091VE96	A0A091WA07	TFIIH basal transcription factor complex helicase XPB subunit.	CDK-activating kinase assembly factor MAT1.	0.998
N306_00329	N306_03378	A0A091VE96	A0A091VC11	TFIIH basal transcription factor complex helicase XPB subunit.	Transcription initiation factor TFIID subunit 5.	0.801
N306_00329	N306_04824	A0A091VE96	A0A091VCB7	TFIIH basal transcription factor complex helicase XPB subunit.	Transcription initiation factor TFIID subunit 3.	0.841
N306_00329	N306_05639	A0A091VE96	A0A091WD55	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.980
N306_00329	N306_05936	A0A091VE96	A0A091VN00	TFIIH basal transcription factor complex helicase XPB subunit.	Transcription initiation factor TFIID subunit 4.	0.836
N306_00329	N306_06190	A0A091VE96	A0A091XWE0	TFIIH basal transcription factor complex helicase XPB subunit.	General transcription factor IIF subunit 2.	0.990
N306_00329	N306_06530	A0A091VE96	A0A091VY35	TFIIH basal transcription factor complex helicase XPB subunit.	General transcription factor IIH subunit 3.	0.999
N306_00329	N306_06871	A0A091VE96	A0A091WBH5	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerase II subunit RPB11-a.	0.977