45 items (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_04360	CCR4-NOT transcription complex subunit 2. (524 aa)
	N306_15258	WD repeat-containing protein 61. (301 aa)
	N306_03599	CCR4-NOT transcription complex subunit 8. (292 aa)
	N306_10532	Exosome complex component RRP42. (272 aa)
	N306_04266	CCR4-NOT transcription complex subunit 4. (762 aa)
	N306_13695	Exosome complex component RRP40. (140 aa)
	N306_01819	Putative ATP-dependent RNA helicase DDX6. (483 aa)
	N306_05645	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (573 aa)
	N306_14004	U6 snRNA-associated Sm-like LSm7. (101 aa)
	N306_13364	CCR4-NOT transcription complex subunit 6-like. (554 aa)
	N306_00688	Uncharacterized protein. (518 aa)
	N306_15499	Polyadenylate-binding protein-interacting protein 1. (353 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (76 aa)
	N306_02019	U6 snRNA-associated Sm-like LSm6. (80 aa)
	N306_05841	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family. (407 aa)
	N306_00534	CCR4-NOT transcription complex subunit 7. (285 aa)
	N306_09026	M7GpppX diphosphatase. (227 aa)
	N306_14503	Poly(A)-specific ribonuclease PARN-like domain-containing protein 1. (485 aa)
	N306_07535	Terminal uridylyltransferase 4. (1594 aa)
	N306_08817	Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family. (864 aa)
	N306_02356	PAB-dependent poly(A)-specific ribonuclease subunit 3. (699 aa)
	N306_07125	PAB-dependent poly(A)-specific ribonuclease subunit 2. (898 aa)
	N306_07475	CCR4-NOT transcription complex subunit 10. (738 aa)
	N306_02865	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family. (211 aa)
	N306_13535	Terminal uridylyltransferase 7. (1477 aa)
	N306_03794	Enhancer of mRNA-decapping protein 3. (506 aa)
	N306_11572	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (326 aa)
	N306_03754	Protein PAT1 2. (647 aa)
	N306_05529	Poly(A)-specific ribonuclease PARN. (519 aa)
	N306_03009	7-methylguanosine phosphate-specific 5'-nucleotidase. (235 aa)
	N306_07836	CCR4-NOT transcription complex subunit 11. (340 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	N306_01632	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (608 aa)
	N306_06297	Enhancer of mRNA-decapping protein 4. (1378 aa)
	N306_02055	U6 snRNA-associated Sm-like LSm4. (91 aa)
	N306_14936	HBS1-like. (671 aa)
	N306_11942	CCR4-NOT transcription complex subunit 6. (544 aa)
	N306_03876	DIS3-like exonuclease 1; Belongs to the RNR ribonuclease family. (1006 aa)
	N306_05370	Target of EGR1 protein 1. (346 aa)
	N306_14052	Cell differentiation protein RCD1. (296 aa)
	N306_03464	KIF1-binding protein. (478 aa)
	N306_14770	Exosome complex component RRP4. (200 aa)
	N306_04442	Exosome complex component RRP45. (419 aa)
	N306_11186	Poly(A) RNA polymerase GLD2. (499 aa)
	N306_09960	Tetratricopeptide repeat protein 37. (1496 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM5	A0A091W671	A0A091WQJ9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	N306_01819	A0A091W671	A0A091XKN1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative ATP-dependent RNA helicase DDX6.	0.867
LSM3	N306_02019	A0A091W671	A0A091WQ52	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm6.	0.999
LSM3	N306_02055	A0A091W671	A0A091W4H5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm4.	0.999
LSM3	N306_02865	A0A091W671	A0A091WAW7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.	0.400
LSM3	N306_03464	A0A091W671	A0A091VJ52	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	KIF1-binding protein.	0.833
LSM3	N306_03754	A0A091W671	A0A091W9D3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Protein PAT1 2.	0.999
LSM3	N306_03794	A0A091W671	A0A091WA71	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Enhancer of mRNA-decapping protein 3.	0.851
LSM3	N306_05841	A0A091W671	A0A091WNB4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family.	0.573
LSM3	N306_06297	A0A091W671	A0A091W554	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Enhancer of mRNA-decapping protein 4.	0.727
LSM3	N306_11572	A0A091W671	A0A091W9W0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.607
LSM3	N306_14004	A0A091W671	A0A091XE96	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm7.	0.999
LSM5	LSM3	A0A091WQJ9	A0A091W671	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	N306_01819	A0A091WQJ9	A0A091XKN1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Putative ATP-dependent RNA helicase DDX6.	0.729
LSM5	N306_02019	A0A091WQJ9	A0A091WQ52	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like LSm6.	0.999
LSM5	N306_02055	A0A091WQJ9	A0A091W4H5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like LSm4.	0.999
LSM5	N306_03464	A0A091WQJ9	A0A091VJ52	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	KIF1-binding protein.	0.707
LSM5	N306_03754	A0A091WQJ9	A0A091W9D3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Protein PAT1 2.	0.998
LSM5	N306_03794	A0A091WQJ9	A0A091WA71	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Enhancer of mRNA-decapping protein 3.	0.771
LSM5	N306_05841	A0A091WQJ9	A0A091WNB4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Eukaryotic initiation factor 4A-II; Belongs to the DEAD box helicase family.	0.498