23 items (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_01316	CDK-activating kinase assembly factor MAT1. (279 aa)
	N306_03524	DNA-directed RNA polymerase I subunit RPA49. (381 aa)
	N306_05639	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	N306_05773	TATA box-binding protein-associated factor RNA polymerase I subunit A. (412 aa)
	N306_12859	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1019 aa)
	N306_05160	TATA-box-binding protein. (194 aa)
	N306_11180	Cyclin-dependent kinase 7. (316 aa)
	N306_14755	Transcription termination factor 1. (347 aa)
	N306_13158	General transcription factor IIH subunit 2. (384 aa)
	N306_00329	TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
	N306_05132	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	N306_04499	DNA-directed RNA polymerase I subunit RPA43. (248 aa)
	N306_06530	General transcription factor IIH subunit 3. (305 aa)
	N306_05834	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (102 aa)
	N306_07507	Nucleolar transcription factor 1. (393 aa)
	N306_06093	TATA box-binding protein-associated factor RNA polymerase I subunit B. (573 aa)
	N306_00925	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (95 aa)
	N306_00115	TATA box-binding protein-associated factor RNA polymerase I subunit D. (199 aa)
	N306_08911	DNA-directed RNA polymerases I and III subunit RPAC1. (264 aa)
	N306_07617	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1676 aa)
	N306_02199	TATA-box-binding protein. (304 aa)
	N306_12153	General transcription factor IIH subunit 5. (59 aa)
	N306_02520	Cyclin-H. (231 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_00115	N306_02199	A0A091W096	A0A091W8B4	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA-box-binding protein.	0.802
N306_00115	N306_03524	A0A091W096	A0A091WB04	TATA box-binding protein-associated factor RNA polymerase I subunit D.	DNA-directed RNA polymerase I subunit RPA49.	0.574
N306_00115	N306_04499	A0A091W096	A0A091VU76	TATA box-binding protein-associated factor RNA polymerase I subunit D.	DNA-directed RNA polymerase I subunit RPA43.	0.609
N306_00115	N306_05160	A0A091W096	A0A091WID5	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA-box-binding protein.	0.802
N306_00115	N306_05773	A0A091W096	A0A091WDU6	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA box-binding protein-associated factor RNA polymerase I subunit A.	0.664
N306_00115	N306_06093	A0A091W096	A0A091WNU7	TATA box-binding protein-associated factor RNA polymerase I subunit D.	TATA box-binding protein-associated factor RNA polymerase I subunit B.	0.954
N306_00115	N306_07507	A0A091W096	A0A091WM58	TATA box-binding protein-associated factor RNA polymerase I subunit D.	Nucleolar transcription factor 1.	0.646
N306_00115	N306_07617	A0A091W096	A0A091W6V7	TATA box-binding protein-associated factor RNA polymerase I subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.595
N306_00115	N306_08911	A0A091W096	A0A091W4I7	TATA box-binding protein-associated factor RNA polymerase I subunit D.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.570
N306_00115	N306_12153	A0A091W096	A0A091W8T6	TATA box-binding protein-associated factor RNA polymerase I subunit D.	General transcription factor IIH subunit 5.	0.574
N306_00115	N306_12859	A0A091W096	A0A091WH22	TATA box-binding protein-associated factor RNA polymerase I subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.600
N306_00115	N306_14755	A0A091W096	A0A091V954	TATA box-binding protein-associated factor RNA polymerase I subunit D.	Transcription termination factor 1.	0.639
N306_00329	N306_00925	A0A091VE96	A0A091XJD4	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.979
N306_00329	N306_01316	A0A091VE96	A0A091WA07	TFIIH basal transcription factor complex helicase XPB subunit.	CDK-activating kinase assembly factor MAT1.	0.998
N306_00329	N306_02199	A0A091VE96	A0A091W8B4	TFIIH basal transcription factor complex helicase XPB subunit.	TATA-box-binding protein.	0.938
N306_00329	N306_02520	A0A091VE96	A0A091W9J2	TFIIH basal transcription factor complex helicase XPB subunit.	Cyclin-H.	0.992
N306_00329	N306_05132	A0A091VE96	A0A091VT23	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.975
N306_00329	N306_05160	A0A091VE96	A0A091WID5	TFIIH basal transcription factor complex helicase XPB subunit.	TATA-box-binding protein.	0.938
N306_00329	N306_05639	A0A091VE96	A0A091WD55	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.980
N306_00329	N306_05834	A0A091VE96	A0A091WLA5	TFIIH basal transcription factor complex helicase XPB subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.980