STRINGSTRING
N306_05727 N306_05727 N306_04614 N306_04614 N306_07628 N306_07628 N306_04576 N306_04576 N306_01693 N306_01693 N306_04881 N306_04881 N306_07629 N306_07629 N306_04668 N306_04668 N306_04368 N306_04368 N306_13577 N306_13577 N306_02219 N306_02219 N306_06745 N306_06745 N306_11981 N306_11981 N306_14387 N306_14387 N306_15208 N306_15208 N306_08591 N306_08591 N306_13957 N306_13957 N306_00076 N306_00076 N306_03583 N306_03583 N306_11756 N306_11756 N306_06089 N306_06089 N306_08695 N306_08695 N306_04234 N306_04234 N306_06025 N306_06025 N306_00504 N306_00504 N306_01091 N306_01091
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N306_05727Ankyrin repeat domain-containing protein 9. (272 aa)
N306_04614Poly(A) polymerase alpha. (735 aa)
N306_07628Histone RNA hairpin-binding protein. (216 aa)
N306_04576Cleavage and polyadenylation specificity factor subunit 2. (782 aa)
N306_01693Cleavage stimulation factor subunit 1. (431 aa)
N306_04881Small nuclear ribonucleoprotein Sm D3. (126 aa)
N306_07629Histone RNA hairpin-binding protein. (191 aa)
N306_04668Cleavage and polyadenylation specificity factor subunit 4. (261 aa)
N306_04368Cleavage and polyadenylation specificity factor subunit 6. (447 aa)
N306_13577Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (57 aa)
N306_02219Polyribonucleotide 5'-hydroxyl-kinase Clp1. (224 aa)
N306_06745Pre-mRNA 3'-end-processing factor FIP1. (487 aa)
N306_11981Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (65 aa)
N306_14387Cleavage and polyadenylation specificity factor subunit 5. (181 aa)
N306_15208Small nuclear ribonucleoprotein G. (60 aa)
N306_08591Cleavage stimulation factor subunit 3. (708 aa)
N306_13957Pre-mRNA 3' end processing protein WDR33. (1330 aa)
N306_00076Pre-mRNA cleavage complex 2 protein Pcf11. (1479 aa)
N306_03583U7 snRNA-associated Sm-like LSm11. (215 aa)
N306_11756Nuclear cap-binding protein subunit 1. (754 aa)
N306_06089Cleavage and polyadenylation specificity factor subunit 3. (666 aa)
N306_08695Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
N306_04234Small nuclear ribonucleoprotein F. (53 aa)
N306_06025Uncharacterized protein. (46 aa)
N306_00504Pre-mRNA 3'-end-processing factor FIP1. (481 aa)
N306_01091Small nuclear ribonucleoprotein-associated protein B. (243 aa)
Your Current Organism:
Opisthocomus hoazin
NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin
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