46 items (Opisthocomus hoazin) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N306_05046	Negative elongation factor B. (545 aa)
	N306_05227	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family. (112 aa)
	N306_08695	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
	N306_15293	RNA polymerase-associated protein LEO1. (637 aa)
	N306_07513	Transcription elongation factor A N-terminal and central domain-containing protein 2. (176 aa)
	N306_06015	Transcription elongation factor A N-terminal and central domain-containing protein. (360 aa)
	N306_01447	Parafibromin. (486 aa)
	N306_14189	Cyclin-T2. (649 aa)
	N306_15258	WD repeat-containing protein 61. (301 aa)
	N306_03565	Cyclin-T1. (388 aa)
	N306_06190	General transcription factor IIF subunit 2. (240 aa)
	N306_10494	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1730 aa)
	N306_00925	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (95 aa)
	N306_07489	ELL-associated factor 1. (210 aa)
	N306_12398	Transcription elongation factor A protein 1. (267 aa)
	N306_05639	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
	N306_04621	Cyclin-K; Belongs to the cyclin family. (587 aa)
	N306_06871	DNA-directed RNA polymerase II subunit RPB11-a. (90 aa)
	N306_07127	Transcription elongation factor A protein 2. (278 aa)
	N306_04649	Cyclin-dependent kinase 2-interacting protein. (209 aa)
	N306_01316	CDK-activating kinase assembly factor MAT1. (279 aa)
	N306_02520	Cyclin-H. (231 aa)
	N306_12153	General transcription factor IIH subunit 5. (59 aa)
	N306_07637	Negative elongation factor A. (508 aa)
	N306_01711	Negative elongation factor C/D. (561 aa)
	N306_06276	DNA-directed RNA polymerase II subunit RPB3. (248 aa)
	N306_08023	Zinc transporter ZIP13. (366 aa)
	N306_13958	DNA-directed RNA polymerase II subunit RPB4. (118 aa)
	N306_08069	RNA polymerase-associated protein RTF1. (622 aa)
	N306_06530	General transcription factor IIH subunit 3. (305 aa)
	N306_13835	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (886 aa)
	N306_05132	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	N306_00329	TFIIH basal transcription factor complex helicase XPB subunit. (705 aa)
	N306_13158	General transcription factor IIH subunit 2. (384 aa)
	N306_13734	ELL-associated factor 2. (221 aa)
	N306_14824	Cyclin-dependent kinase 9. (341 aa)
	N306_11180	Cyclin-dependent kinase 7. (316 aa)
	N306_00242	RNA polymerase-associated protein CTR9. (1152 aa)
	N306_02835	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1154 aa)
	N306_13952	Protein IWS1. (616 aa)
	N306_02129	AF4/FMR2 family member 4. (1160 aa)
	N306_13577	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (57 aa)
	N306_02267	Transcription elongation factor B polypeptide 3. (754 aa)
	N306_11756	Nuclear cap-binding protein subunit 1. (754 aa)
	N306_02959	Protein AF-9. (510 aa)
	N306_05834	DNA-directed RNA polymerases I, II, and III subunit RPABC3. (102 aa)

Your Current Organism:

Opisthocomus hoazin

NCBI taxonomy Id: 30419
Other names: O. hoazin, Opisthocomus hoazin hoazin, hoatzin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N306_00242	N306_00925	A0A091V5E4	A0A091XJD4	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.931
N306_00242	N306_01447	A0A091V5E4	A0A091WH85	RNA polymerase-associated protein CTR9.	Parafibromin.	0.999
N306_00242	N306_02129	A0A091V5E4	A0A091X3S8	RNA polymerase-associated protein CTR9.	AF4/FMR2 family member 4.	0.448
N306_00242	N306_02267	A0A091V5E4	A0A091WN18	RNA polymerase-associated protein CTR9.	Transcription elongation factor B polypeptide 3.	0.829
N306_00242	N306_02835	A0A091V5E4	A0A091XHG2	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.957
N306_00242	N306_04621	A0A091V5E4	A0A091WCK3	RNA polymerase-associated protein CTR9.	Cyclin-K; Belongs to the cyclin family.	0.601
N306_00242	N306_05132	A0A091V5E4	A0A091VT23	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.913
N306_00242	N306_05227	A0A091V5E4	A0A091WKN1	RNA polymerase-associated protein CTR9.	Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.	0.677
N306_00242	N306_05639	A0A091V5E4	A0A091WD55	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.919
N306_00242	N306_05834	A0A091V5E4	A0A091WLA5	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerases I, II, and III subunit RPABC3.	0.951
N306_00242	N306_06015	A0A091V5E4	A0A091WIJ9	RNA polymerase-associated protein CTR9.	Transcription elongation factor A N-terminal and central domain-containing protein.	0.502
N306_00242	N306_06276	A0A091V5E4	A0A091W3D5	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerase II subunit RPB3.	0.973
N306_00242	N306_06871	A0A091V5E4	A0A091WBH5	RNA polymerase-associated protein CTR9.	DNA-directed RNA polymerase II subunit RPB11-a.	0.904
N306_00242	N306_07127	A0A091V5E4	A0A091WB28	RNA polymerase-associated protein CTR9.	Transcription elongation factor A protein 2.	0.756
N306_00242	N306_07513	A0A091V5E4	A0A091WIX5	RNA polymerase-associated protein CTR9.	Transcription elongation factor A N-terminal and central domain-containing protein 2.	0.502
N306_00242	N306_08069	A0A091V5E4	A0A091W1L8	RNA polymerase-associated protein CTR9.	RNA polymerase-associated protein RTF1.	0.997
N306_00242	N306_08695	A0A091V5E4	A0A091WKL9	RNA polymerase-associated protein CTR9.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.456
N306_00242	N306_10494	A0A091V5E4	A0A091XKL3	RNA polymerase-associated protein CTR9.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.971
N306_00242	N306_11180	A0A091V5E4	A0A091V8Y5	RNA polymerase-associated protein CTR9.	Cyclin-dependent kinase 7.	0.417
N306_00242	N306_11756	A0A091V5E4	A0A091WMS4	RNA polymerase-associated protein CTR9.	Nuclear cap-binding protein subunit 1.	0.496