(24 nodes) Identical protein binding network (Bacillus alkalitelluris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_002019645_04805	Unannotated protein. (385 aa)
	GCA_002019645_00107	Unannotated protein. (95 aa)
	GCA_002019645_00295	Unannotated protein. (127 aa)
	GCA_002019645_00323	Unannotated protein. (120 aa)
	GCA_002019645_00683	Unannotated protein. (197 aa)
	GCA_002019645_00773	Unannotated protein. (709 aa)
	GCA_002019645_00781	Unannotated protein. (281 aa)
	GCA_002019645_00884	Unannotated protein. (1003 aa)
	GCA_002019645_00965	Unannotated protein. (782 aa)
	GCA_002019645_02080	Unannotated protein. (96 aa)
	GCA_002019645_02212	Unannotated protein. (138 aa)
	GCA_002019645_02269	Unannotated protein. (193 aa)
	GCA_002019645_02328	Unannotated protein. (219 aa)
	GCA_002019645_02569	Unannotated protein. (244 aa)
	GCA_002019645_02726	Unannotated protein. (99 aa)
	GCA_002019645_03175	Unannotated protein. (181 aa)
	GCA_002019645_03251	Unannotated protein. (141 aa)
	GCA_002019645_03334	Unannotated protein. (169 aa)
	GCA_002019645_03337	Unannotated protein. (145 aa)
	GCA_002019645_03475	Unannotated protein. (606 aa)
	GCA_002019645_03585	Unannotated protein. (223 aa)
	GCA_002019645_04010	Unannotated protein. (482 aa)
	GCA_002019645_04080	Unannotated protein. (426 aa)
	GCA_002019645_04946	Unannotated protein. (214 aa)

Your Current Organism:

Bacillus alkalitelluris

NCBI taxonomy Id: 304268
Other names: B. alkalitelluris, Bacillus alkalitelluris Lee et al. 2008, Bacillus sp. BA288, DSM 16976, KCTC 3947, strain BA288

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_002019645_00107	GCA_002019645_00323	Unannotated protein.	Unannotated protein.	0.556
GCA_002019645_00107	GCA_002019645_02080	Unannotated protein.	Unannotated protein.	0.514
GCA_002019645_00295	GCA_002019645_02726	Unannotated protein.	Unannotated protein.	0.555
GCA_002019645_00323	GCA_002019645_00107	Unannotated protein.	Unannotated protein.	0.556
GCA_002019645_00965	GCA_002019645_04010	Unannotated protein.	Unannotated protein.	0.821
GCA_002019645_00965	GCA_002019645_04080	Unannotated protein.	Unannotated protein.	0.826
GCA_002019645_02080	GCA_002019645_00107	Unannotated protein.	Unannotated protein.	0.514
GCA_002019645_02080	GCA_002019645_03337	Unannotated protein.	Unannotated protein.	0.573
GCA_002019645_02726	GCA_002019645_00295	Unannotated protein.	Unannotated protein.	0.555
GCA_002019645_02726	GCA_002019645_03337	Unannotated protein.	Unannotated protein.	0.601
GCA_002019645_03334	GCA_002019645_03337	Unannotated protein.	Unannotated protein.	0.800
GCA_002019645_03337	GCA_002019645_02080	Unannotated protein.	Unannotated protein.	0.573
GCA_002019645_03337	GCA_002019645_02726	Unannotated protein.	Unannotated protein.	0.601
GCA_002019645_03337	GCA_002019645_03334	Unannotated protein.	Unannotated protein.	0.800
GCA_002019645_04010	GCA_002019645_00965	Unannotated protein.	Unannotated protein.	0.821
GCA_002019645_04010	GCA_002019645_04080	Unannotated protein.	Unannotated protein.	0.613
GCA_002019645_04080	GCA_002019645_00965	Unannotated protein.	Unannotated protein.	0.826
GCA_002019645_04080	GCA_002019645_04010	Unannotated protein.	Unannotated protein.	0.613