STRINGSTRING
RFC3 RFC3 BRCA2 BRCA2 CHTF18 CHTF18 MCM2 MCM2 TDRD3 TDRD3 BRIP1 BRIP1 RAD51C RAD51C MLH1 MLH1 ATRIP ATRIP MUS81 MUS81 WRN WRN POLD4 POLD4 GINS4 GINS4 MCM3 MCM3 MRE11 MRE11 MSH5 MSH5 RHNO1 RHNO1 A0A4W2C4K5 A0A4W2C4K5 RECQL5 RECQL5 MCMBP MCMBP RAD52 RAD52 A0A4W2C6P0 A0A4W2C6P0 FSBP FSBP A0A4W2CA39 A0A4W2CA39 POLA2 POLA2 NBN NBN DBF4B DBF4B RAD1 RAD1 POLE POLE ERCC1 ERCC1 MCPH1 MCPH1 LIG1 LIG1 MCM4 MCM4 POLD1 POLD1 TOP3B TOP3B WDHD1 WDHD1 ORC6 ORC6 XPA XPA RPA2 RPA2 DSCC1 DSCC1 REV1 REV1 A0A4W2CYF2 A0A4W2CYF2 RAD51 RAD51 ORC2 ORC2 ORC3 ORC3 SLF1 SLF1 A0A4W2D2X3 A0A4W2D2X3 CDC45 CDC45 RFC4 RFC4 PCNA PCNA POLK POLK POLE2 POLE2 RAD54L RAD54L ATR ATR DBF4 DBF4 ORC1 ORC1 MCM7 MCM7 MEIOB MEIOB RAD18 RAD18 ATAD5 ATAD5 SLX1A SLX1A MSH4 MSH4 RBBP8 RBBP8 RMI1 RMI1 POLI POLI RFC2 RFC2 POLH POLH ATM ATM PRIM2 PRIM2 RAD51D RAD51D PALB2 PALB2 RAD9A RAD9A DDX11 DDX11 BLM BLM TP53BP1 TP53BP1 RFC5 RFC5 EME1 EME1 MSH3 MSH3 FBH1 FBH1 SLX4 SLX4 MSH6 MSH6 MCM10 MCM10 CHEK2 CHEK2 GINS3 GINS3 CHTF8 CHTF8 MCM9 MCM9 ETAA1 ETAA1 MAD2L2 MAD2L2 POLD3 POLD3 GINS1 GINS1 BRCA1 BRCA1 MCMDC2 MCMDC2 GEN1 GEN1 POLE4 POLE4 A0A4W2EGX9 A0A4W2EGX9 CDT1 CDT1 HUS1 HUS1 PMS2 PMS2 RAD9B RAD9B RAD17 RAD17 REV3L REV3L BARD1 BARD1 ERCC5 ERCC5 CDC7 CDC7 MLH3 MLH3 TIPIN TIPIN XRCC2 XRCC2 CHD1L CHD1L RPA3 RPA3 UBE2B UBE2B CLSPN CLSPN RFC1 RFC1 HLTF HLTF TOPBP1 TOPBP1 MCM6 MCM6 PMS1 PMS1 POLE3 POLE3 ERCC4 ERCC4 TOP3A TOP3A TIMELESS TIMELESS RTEL1 RTEL1 POLD2 POLD2 DNA2 DNA2 MSH2 MSH2 RCHY1 RCHY1 MCM5 MCM5 ORC5 ORC5 TM4SF19 TM4SF19 RAD51B RAD51B GINS2 GINS2 FEN1 FEN1 MCM8 MCM8 RPA1 RPA1 PRIM1 PRIM1 RMI2 RMI2 EXO1 EXO1 DMC1 DMC1 CDC6 CDC6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RFC3Replication factor C subunit 3. (356 aa)
BRCA2BRCA2 DNA repair associated. (3420 aa)
CHTF18Chromosome transmission fidelity factor 18. (978 aa)
MCM2DNA helicase; Belongs to the MCM family. (902 aa)
TDRD3Tudor domain containing 3. (744 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (1172 aa)
RAD51CRAD51 paralog C. (442 aa)
MLH1MutL homolog 1. (758 aa)
ATRIPATR interacting protein. (789 aa)
MUS81MUS81 structure-specific endonuclease subunit. (552 aa)
WRNWRN RecQ like helicase. (1409 aa)
POLD4Uncharacterized protein. (315 aa)
GINS4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
MCM3DNA helicase; Belongs to the MCM family. (808 aa)
MRE11MRE11 homolog, double strand break repair nuclease; Belongs to the MRE11/RAD32 family. (943 aa)
MSH5DNA_MISMATCH_REPAIR_2 domain-containing protein. (832 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (241 aa)
A0A4W2C4K5RECA_2 domain-containing protein. (525 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (987 aa)
MCMBPMinichromosome maintenance complex binding protein. (642 aa)
RAD52RAD52 homolog, DNA repair protein. (416 aa)
A0A4W2C6P0Piezo_RRas_bdg domain-containing protein. (349 aa)
FSBPUncharacterized protein. (966 aa)
A0A4W2CA39PIEZO domain-containing protein. (449 aa)
POLA2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (600 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (809 aa)
DBF4BDBF4 zinc finger B. (569 aa)
RAD1RAD1 checkpoint DNA exonuclease. (279 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2289 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (351 aa)
MCPH1Microcephalin 1. (872 aa)
LIG1DNA ligase. (1303 aa)
MCM4DNA helicase; Belongs to the MCM family. (836 aa)
POLD1DNA polymerase. (1106 aa)
TOP3BDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (861 aa)
WDHD1WD repeat and HMG-box DNA binding protein 1. (1127 aa)
ORC6Origin recognition complex subunit 6. (203 aa)
XPAXPA, DNA damage recognition and repair factor. (273 aa)
RPA2RPA_C domain-containing protein. (270 aa)
DSCC1DNA replication and sister chromatid cohesion 1. (389 aa)
REV1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1253 aa)
A0A4W2CYF2PWWP domain-containing protein. (159 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
ORC2Origin recognition complex subunit 2. (577 aa)
ORC3Origin recognition complex subunit 3. (713 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1175 aa)
A0A4W2D2X3Zinc-hook domain-containing protein. (1440 aa)
CDC45Cell division cycle 45. (616 aa)
RFC4Replication factor C subunit 4. (364 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (326 aa)
POLKDNA polymerase kappa. (911 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
RAD54LRAD54 like. (749 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2644 aa)
DBF4DBF4 zinc finger. (674 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (859 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
MEIOBMeiosis specific with OB-fold. (472 aa)
RAD18RAD18 E3 ubiquitin protein ligase. (501 aa)
ATAD5ATPase family AAA domain containing 5. (1893 aa)
SLX1AStructure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (366 aa)
MSH4MutS homolog 4. (934 aa)
RBBP8RB binding protein 8, endonuclease. (859 aa)
RMI1RecQ mediated genome instability 1. (624 aa)
POLIDNA polymerase iota. (760 aa)
RFC2Replication factor C subunit 2. (352 aa)
POLHDNA polymerase eta. (711 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3054 aa)
PRIM2DNA primase large subunit; Regulatory subunit of the DNA primase complex and component of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which play an essential role in the initiation of DNA synthesis. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. (510 aa)
RAD51DRAD51 paralog D. (418 aa)
PALB2Partner and localizer of BRCA2. (1195 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (422 aa)
DDX11DEAD/H-box helicase 11. (1012 aa)
BLMBLM RecQ like helicase. (1430 aa)
TP53BP1Tumor protein p53 binding protein 1. (1966 aa)
RFC5Replication factor C subunit 5. (527 aa)
EME1Essential meiotic structure-specific endonuclease 1. (574 aa)
MSH3DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1118 aa)
FBH1F-box DNA helicase 1. (1045 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1754 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1361 aa)
MCM10Minichromosome maintenance 10 replication initiation factor. (916 aa)
CHEK2Checkpoint kinase 2. (534 aa)
GINS3GINS complex subunit 3. (216 aa)
CHTF8Chromosome transmission fidelity factor 8. (121 aa)
MCM9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1139 aa)
ETAA1ETAA1 activator of ATR kinase. (899 aa)
MAD2L2Mitotic arrest deficient 2 like 2. (211 aa)
POLD3Uncharacterized protein. (425 aa)
GINS1GINS complex subunit 1. (196 aa)
BRCA1BRCA1 DNA repair associated. (1941 aa)
MCMDC2Minichromosome maintenance domain containing 2. (681 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (906 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (120 aa)
A0A4W2EGX9Uncharacterized protein. (502 aa)
CDT1Chromatin licensing and DNA replication factor 1. (600 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
PMS2MutL_C domain-containing protein. (461 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (417 aa)
RAD17RAD17 checkpoint clamp loader component. (708 aa)
REV3LREV3 like, DNA directed polymerase zeta catalytic subunit. (3133 aa)
BARD1BRCA1 associated RING domain 1. (773 aa)
ERCC5ERCC excision repair 5, endonuclease. (1201 aa)
CDC7Cell division cycle 7. (576 aa)
MLH3MutL homolog 3. (1514 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (303 aa)
XRCC2X-ray repair cross complementing 2. (319 aa)
CHD1LChromodomain helicase DNA binding protein 1 like. (897 aa)
RPA3Replication protein A3. (121 aa)
UBE2BUbiquitin conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family. (180 aa)
CLSPNClaspin. (1338 aa)
RFC1Replication factor C subunit 1. (1146 aa)
HLTFHelicase like transcription factor. (1009 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1521 aa)
MCM6DNA helicase; Belongs to the MCM family. (821 aa)
PMS1PMS1 homolog 1, mismatch repair system component. (915 aa)
POLE3DNA polymerase epsilon 3, accessory subunit. (147 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (916 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1002 aa)
TIMELESSTimeless circadian regulator. (1213 aa)
RTEL1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1266 aa)
POLD2DNA polymerase delta 2, accessory subunit. (580 aa)
DNA2DNA replication helicase/nuclease 2. (1061 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
RCHY1Ring finger and CHY zinc finger domain containing 1. (261 aa)
MCM5DNA helicase; Belongs to the MCM family. (892 aa)
ORC5Origin recognition complex subunit 5. (446 aa)
TM4SF19Uncharacterized protein. (209 aa)
RAD51BRAD51 paralog B. (350 aa)
GINS2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (214 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
MCM8MCM domain-containing protein; Belongs to the MCM family. (832 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
PRIM1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (418 aa)
RMI2RecQ mediated genome instability 2. (157 aa)
EXO1Exonuclease 1. (835 aa)
DMC1DNA meiotic recombinase 1; Belongs to the RecA family. (340 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (607 aa)
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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