(12 nodes) U4/U6 x U5 tri-snRNP complex network (Bos indicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SART1	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (802 aa)
	EFTUD2	Elongation factor Tu GTP binding domain containing 2. (1004 aa)
	TXNL4B	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	PRPF31	Pre-mRNA processing factor 31. (522 aa)
	DDX23	DEAD-box helicase 23. (909 aa)
	PRPF4	Pre-mRNA processing factor 4. (521 aa)
	PRPF3	Pre-mRNA processing factor 3. (699 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	PRPF6	Pre-mRNA processing factor 6. (1044 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
	PRPF8	Pre-mRNA processing factor 8. (2335 aa)
	SNRNP40	Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX23	EFTUD2	A0A4W2D116	A0A4W2CBY2	DEAD-box helicase 23.	Elongation factor Tu GTP binding domain containing 2.	0.993
DDX23	PRPF3	A0A4W2D116	A0A4W2D707	DEAD-box helicase 23.	Pre-mRNA processing factor 3.	0.971
DDX23	PRPF31	A0A4W2D116	A0A4W2CJ62	DEAD-box helicase 23.	Pre-mRNA processing factor 31.	0.936
DDX23	PRPF4	A0A4W2D116	A0A4W2D530	DEAD-box helicase 23.	Pre-mRNA processing factor 4.	0.963
DDX23	PRPF6	A0A4W2D116	A0A4W2EIE2	DEAD-box helicase 23.	Pre-mRNA processing factor 6.	0.995
DDX23	PRPF8	A0A4W2D116	A0A4W2FR47	DEAD-box helicase 23.	Pre-mRNA processing factor 8.	0.997
DDX23	SART1	A0A4W2D116	A0A4W2BTS9	DEAD-box helicase 23.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.968
DDX23	SNRNP200	A0A4W2D116	A0A4W2EN10	DEAD-box helicase 23.	Small nuclear ribonucleoprotein U5 subunit 200.	0.989
DDX23	SNRNP40	A0A4W2D116	A0A4W2HHG9	DEAD-box helicase 23.	Small nuclear ribonucleoprotein U5 subunit 40.	0.991
DDX23	SNU13	A0A4W2D116	A0A4W2DUV4	DEAD-box helicase 23.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.813
DDX23	TXNL4B	A0A4W2D116	A0A4W2CFF9	DEAD-box helicase 23.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.965
EFTUD2	DDX23	A0A4W2CBY2	A0A4W2D116	Elongation factor Tu GTP binding domain containing 2.	DEAD-box helicase 23.	0.993
EFTUD2	PRPF3	A0A4W2CBY2	A0A4W2D707	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 3.	0.978
EFTUD2	PRPF31	A0A4W2CBY2	A0A4W2CJ62	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 31.	0.982
EFTUD2	PRPF4	A0A4W2CBY2	A0A4W2D530	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 4.	0.984
EFTUD2	PRPF6	A0A4W2CBY2	A0A4W2EIE2	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 6.	0.999
EFTUD2	PRPF8	A0A4W2CBY2	A0A4W2FR47	Elongation factor Tu GTP binding domain containing 2.	Pre-mRNA processing factor 8.	0.999
EFTUD2	SART1	A0A4W2CBY2	A0A4W2BTS9	Elongation factor Tu GTP binding domain containing 2.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.993
EFTUD2	SNRNP200	A0A4W2CBY2	A0A4W2EN10	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
EFTUD2	SNRNP40	A0A4W2CBY2	A0A4W2HHG9	Elongation factor Tu GTP binding domain containing 2.	Small nuclear ribonucleoprotein U5 subunit 40.	0.999

page 1 of 7

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About