29 items (Bos indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NUP58	Nucleoporin 58. (586 aa)
	NUP50	Nucleoporin 50. (465 aa)
	NUP85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (656 aa)
	SEC13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (325 aa)
	NUP160	Nucleoporin 160. (1402 aa)
	NUP188	Nucleoporin 188. (2017 aa)
	GLE1	GLE1 RNA export mediator. (698 aa)
	NUP205	Nucleoporin 205. (2024 aa)
	NUP214	Nucleoporin 214. (2141 aa)
	NUP42	Nucleoporin 42. (420 aa)
	RAE1	Ribonucleic acid export 1. (367 aa)
	NDC1	NDC1 transmembrane nucleoporin. (784 aa)
	NUP210L	Nucleoporin 210 like. (1883 aa)
	NUP210	Nucleoporin 210. (1889 aa)
	TPR	Translocated promoter region, nuclear basket protein. (2444 aa)
	NUP93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (819 aa)
	NUP88	Nucleoporin 88. (741 aa)
	NUP133	Nucleoporin 133. (1156 aa)
	NUP98	Nucleoporin 98. (1816 aa)
	NUP107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (960 aa)
	AAAS	Aladin WD repeat nucleoporin. (547 aa)
	NUP37	Nucleoporin 37. (326 aa)
	NUP155	Nucleoporin 155. (1449 aa)
	A0A4W2G7S7	Uncharacterized protein. (90 aa)
	NUP43	Nucleoporin 43. (380 aa)
	AHCTF1	AT-hook containing transcription factor 1. (2276 aa)
	NUP35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (327 aa)
	POM121C	Uncharacterized protein. (1216 aa)
	NCOA5	Nuclear receptor coactivator 5. (584 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2G7S7	AAAS	A0A4W2G7S7	A0A4W2EPM1	Uncharacterized protein.	Aladin WD repeat nucleoporin.	0.687
A0A4W2G7S7	AHCTF1	A0A4W2G7S7	A0A4W2H1G2	Uncharacterized protein.	AT-hook containing transcription factor 1.	0.460
A0A4W2G7S7	GLE1	A0A4W2G7S7	A0A4W2CUP7	Uncharacterized protein.	GLE1 RNA export mediator.	0.524
A0A4W2G7S7	NCOA5	A0A4W2G7S7	A0A4W2HX85	Uncharacterized protein.	Nuclear receptor coactivator 5.	0.718
A0A4W2G7S7	NDC1	A0A4W2G7S7	A0A4W2DDV0	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.634
A0A4W2G7S7	NUP107	A0A4W2G7S7	A0A4W2EIY8	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.790
A0A4W2G7S7	NUP133	A0A4W2G7S7	A0A4W2E0V0	Uncharacterized protein.	Nucleoporin 133.	0.782
A0A4W2G7S7	NUP155	A0A4W2G7S7	A0A4W2FA16	Uncharacterized protein.	Nucleoporin 155.	0.832
A0A4W2G7S7	NUP160	A0A4W2G7S7	A0A4W2CPE1	Uncharacterized protein.	Nucleoporin 160.	0.743
A0A4W2G7S7	NUP188	A0A4W2G7S7	A0A4W2CQS3	Uncharacterized protein.	Nucleoporin 188.	0.670
A0A4W2G7S7	NUP205	A0A4W2G7S7	A0A4W2CVC1	Uncharacterized protein.	Nucleoporin 205.	0.763
A0A4W2G7S7	NUP210	A0A4W2G7S7	A0A4W2DNK7	Uncharacterized protein.	Nucleoporin 210.	0.600
A0A4W2G7S7	NUP210L	A0A4W2G7S7	A0A4W2DHE2	Uncharacterized protein.	Nucleoporin 210 like.	0.600
A0A4W2G7S7	NUP214	A0A4W2G7S7	A0A4W2D8U1	Uncharacterized protein.	Nucleoporin 214.	0.788
A0A4W2G7S7	NUP35	A0A4W2G7S7	A0A4W2HD80	Uncharacterized protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.642
A0A4W2G7S7	NUP43	A0A4W2G7S7	A0A4W2GIF3	Uncharacterized protein.	Nucleoporin 43.	0.745
A0A4W2G7S7	NUP50	A0A4W2G7S7	A0A4W2BY87	Uncharacterized protein.	Nucleoporin 50.	0.582
A0A4W2G7S7	NUP58	A0A4W2G7S7	A0A4W2BKE3	Uncharacterized protein.	Nucleoporin 58.	0.774
A0A4W2G7S7	NUP85	A0A4W2G7S7	A0A4W2C5A8	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.790
A0A4W2G7S7	NUP88	A0A4W2G7S7	A0A4W2E0A9	Uncharacterized protein.	Nucleoporin 88.	0.771

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