34 items (Bos indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	AP3B1	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1084 aa)
	RARA	Retinoic acid receptor alpha. (477 aa)
	ATF4	Activating transcription factor 4. (348 aa)
	TAF6	TATA-box binding protein associated factor 6. (740 aa)
	TAF8	TATA-box binding protein associated factor 8. (310 aa)
	TAF9	TATA-box binding protein associated factor 9. (264 aa)
	A0A4W2CJR6	TFIID_20kDa domain-containing protein. (152 aa)
	EPAS1	Endothelial PAS domain protein 1. (928 aa)
	TAF12	TFIID_20kDa domain-containing protein. (161 aa)
	TAF11	TATA-box binding protein associated factor 11. (210 aa)
	TAF3	TATA-box binding protein associated factor 3. (932 aa)
	STAT3	Signal transducer and activator of transcription. (770 aa)
	CREB1	cAMP responsive element binding protein 1. (341 aa)
	C5AR1	Complement C5a receptor 1; Belongs to the G-protein coupled receptor 1 family. (352 aa)
	THRB	Thyroid hormone receptor beta. (476 aa)
	TAF2	TATA-box binding protein associated factor 2. (1251 aa)
	ZBTB1	Zinc finger and BTB domain containing 1. (713 aa)
	TAF4B	TATA-box binding protein associated factor 4b. (869 aa)
	TAF4	TATA-box binding protein associated factor 4. (1061 aa)
	S100A10	S100 calcium binding protein A10; Belongs to the S-100 family. (97 aa)
	MED1	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1575 aa)
	FOXE3	Forkhead box E3. (315 aa)
	TAF5	TATA-box binding protein associated factor 5. (800 aa)
	ATF2	Activating transcription factor 2. (447 aa)
	TFCP2	Transcription factor CP2. (501 aa)
	NR1H3	Nuclear receptor subfamily 1 group H member 3. (447 aa)
	SUPT6H	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1729 aa)
	RXRA	Retinoid X receptor alpha. (657 aa)
	HLTF	Helicase like transcription factor. (1009 aa)
	TBP	Uncharacterized protein. (318 aa)
	NCOA1	Nuclear receptor coactivator. (1440 aa)
	TAF10	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (218 aa)
	SREBF1	Sterol regulatory element binding transcription factor 1. (1146 aa)
	VDR	Vitamin D receptor. (425 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2CJR6	MED1	A0A4W2CJR6	A0A4W2DTJ9	TFIID_20kDa domain-containing protein.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.468
A0A4W2CJR6	TAF10	A0A4W2CJR6	A0A4W2EKG6	TFIID_20kDa domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.989
A0A4W2CJR6	TAF11	A0A4W2CJR6	A0A4W2FNP1	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 11.	0.957
A0A4W2CJR6	TAF2	A0A4W2CJR6	A0A4W2H1X1	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 2.	0.986
A0A4W2CJR6	TAF3	A0A4W2CJR6	A0A4W2ECG2	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 3.	0.983
A0A4W2CJR6	TAF4	A0A4W2CJR6	A0A4W2I5M9	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 4.	0.991
A0A4W2CJR6	TAF4B	A0A4W2CJR6	A0A4W2BUJ5	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 4b.	0.979
A0A4W2CJR6	TAF5	A0A4W2CJR6	A0A4W2FW37	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 5.	0.988
A0A4W2CJR6	TAF6	A0A4W2CJR6	A0A4W2C2B0	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 6.	0.989
A0A4W2CJR6	TAF8	A0A4W2CJR6	A0A4W2C4C6	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 8.	0.926
A0A4W2CJR6	TAF9	A0A4W2CJR6	A0A4W2CB90	TFIID_20kDa domain-containing protein.	TATA-box binding protein associated factor 9.	0.989
A0A4W2CJR6	TBP	A0A4W2CJR6	A0A4W2EP80	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.932
ATF2	ATF4	A0A4W2D7L6	A0A4W2C0W0	Activating transcription factor 2.	Activating transcription factor 4.	0.953
ATF2	CREB1	A0A4W2D7L6	A0A4W2E7C2	Activating transcription factor 2.	cAMP responsive element binding protein 1.	0.948
ATF2	STAT3	A0A4W2D7L6	A0A4W2E9W2	Activating transcription factor 2.	Signal transducer and activator of transcription.	0.543
ATF4	ATF2	A0A4W2C0W0	A0A4W2D7L6	Activating transcription factor 4.	Activating transcription factor 2.	0.953
ATF4	CREB1	A0A4W2C0W0	A0A4W2E7C2	Activating transcription factor 4.	cAMP responsive element binding protein 1.	0.957
CREB1	ATF2	A0A4W2E7C2	A0A4W2D7L6	cAMP responsive element binding protein 1.	Activating transcription factor 2.	0.948
CREB1	ATF4	A0A4W2E7C2	A0A4W2C0W0	cAMP responsive element binding protein 1.	Activating transcription factor 4.	0.957
CREB1	STAT3	A0A4W2E7C2	A0A4W2E9W2	cAMP responsive element binding protein 1.	Signal transducer and activator of transcription.	0.679

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