40 items (Bos indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RP1	RP1 axonemal microtubule associated. (2105 aa)
	TULP1	TUB like protein 1; Belongs to the TUB family. (586 aa)
	CRB1	Crumbs cell polarity complex component 1. (1408 aa)
	LCA5	Lebercilin LCA5. (684 aa)
	MKKS	McKusick-Kaufman syndrome. (570 aa)
	USP45	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (817 aa)
	TUB	Tubby-like protein; Belongs to the TUB family. (563 aa)
	CRB2	Crumbs cell polarity complex component 2. (1281 aa)
	CNGB1	Cyclic nucleotide gated channel subunit beta 1. (937 aa)
	ABCA4	ATP binding cassette subfamily A member 4. (2281 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1544 aa)
	BBS4	Bardet-Biedl syndrome 4. (519 aa)
	CDHR1	Cadherin related family member 1. (868 aa)
	CROCC2	Ciliary rootlet coiled-coil, rootletin family member 2. (1712 aa)
	BBS10	Bardet-Biedl syndrome 10. (721 aa)
	NXNL1	Nucleoredoxin like 1. (218 aa)
	USH2A	Usherin. (5204 aa)
	BBS12	Bardet-Biedl syndrome 12. (710 aa)
	USH1G	USH1 protein network component sans. (526 aa)
	NPHP3	TPR_REGION domain-containing protein. (1331 aa)
	BBS2	Bardet-Biedl syndrome 2 protein homolog. (721 aa)
	A0A4W2E716	Uncharacterized protein. (285 aa)
	NPHP4	Nephrocystin 4. (1431 aa)
	BBS1	BBS1 domain-containing protein. (667 aa)
	IQCB1	IQ motif containing B1. (598 aa)
	ATP1B2	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (290 aa)
	MAK	Male germ cell associated kinase. (648 aa)
	RHO	Rhodopsin. (348 aa)
	CLN8	CLN8 transmembrane ER and ERGIC protein. (339 aa)
	PROM1	Prominin 1. (853 aa)
	SPATA7	Spermatogenesis associated 7. (718 aa)
	ADGRV1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6300 aa)
	CROCC	Ciliary rootlet coiled-coil, rootletin. (2071 aa)
	CLRN1	Clarin 1. (232 aa)
	SLC2A1	Solute carrier family 2 member 1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (530 aa)
	CLCN3	Chloride channel protein. (872 aa)
	A0A4W2ESG3	Thioredoxin-like_fold domain-containing protein. (465 aa)
	DRAM2	DNA damage regulated autophagy modulator 2. (266 aa)
	USH1C	USH1 protein network component harmonin. (859 aa)
	CDH23	Cadherin related 23. (3347 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2E716	CNGB1	A0A4W2E716	A0A4W2CT70	Uncharacterized protein.	Cyclic nucleotide gated channel subunit beta 1.	0.556
A0A4W2E716	RHO	A0A4W2E716	A0A4W2GU91	Uncharacterized protein.	Rhodopsin.	0.477
ABCA4	NXNL1	A0A4W2CZG5	A0A4W2DC39	ATP binding cassette subfamily A member 4.	Nucleoredoxin like 1.	0.587
ABCA4	RHO	A0A4W2CZG5	A0A4W2GU91	ATP binding cassette subfamily A member 4.	Rhodopsin.	0.538
ABCA4	USH2A	A0A4W2CZG5	A0A4W2DEE6	ATP binding cassette subfamily A member 4.	Usherin.	0.518
ADGRV1	CDH23	A0A4W2F3Y5	A0A4W2BW60	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Cadherin related 23.	0.723
ADGRV1	CLRN1	A0A4W2F3Y5	A0A4W2EX96	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Clarin 1.	0.482
ADGRV1	USH1C	A0A4W2F3Y5	A0A4W2BSH1	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	USH1 protein network component harmonin.	0.576
ADGRV1	USH1G	A0A4W2F3Y5	A0A4W2DVL7	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	USH1 protein network component sans.	0.729
ADGRV1	USH2A	A0A4W2F3Y5	A0A4W2DEE6	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.	Usherin.	0.420
BBS1	BBS10	A0A4W2EAC8	A0A4W2DB36	BBS1 domain-containing protein.	Bardet-Biedl syndrome 10.	0.735
BBS1	BBS12	A0A4W2EAC8	A0A4W2DSR1	BBS1 domain-containing protein.	Bardet-Biedl syndrome 12.	0.627
BBS1	BBS2	A0A4W2EAC8	A0A4W2E6G9	BBS1 domain-containing protein.	Bardet-Biedl syndrome 2 protein homolog.	0.999
BBS1	BBS4	A0A4W2EAC8	A0A4W2D313	BBS1 domain-containing protein.	Bardet-Biedl syndrome 4.	0.999
BBS1	NPHP3	A0A4W2EAC8	A0A4W2DZB7	BBS1 domain-containing protein.	TPR_REGION domain-containing protein.	0.419
BBS10	BBS1	A0A4W2DB36	A0A4W2EAC8	Bardet-Biedl syndrome 10.	BBS1 domain-containing protein.	0.735
BBS10	BBS12	A0A4W2DB36	A0A4W2DSR1	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 12.	0.951
BBS10	BBS2	A0A4W2DB36	A0A4W2E6G9	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 2 protein homolog.	0.753
BBS10	BBS4	A0A4W2DB36	A0A4W2D313	Bardet-Biedl syndrome 10.	Bardet-Biedl syndrome 4.	0.716
BBS10	MKKS	A0A4W2DB36	A0A4W2CBZ6	Bardet-Biedl syndrome 10.	McKusick-Kaufman syndrome.	0.737

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