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PARP3 PARP3 A0A4W2BP37 A0A4W2BP37 XPC XPC DDB1 DDB1 PAXX PAXX CUL5 CUL5 RFWD3 RFWD3 PHF1 PHF1 TRAIP TRAIP MRE11 MRE11 SLF2 SLF2 ARPC1A ARPC1A TONSL TONSL ARPC4 ARPC4 WDR76 WDR76 WRAP53 WRAP53 NBN NBN WDR70 WDR70 UFL1 UFL1 CNTD1 CNTD1 KAT7 KAT7 RNF169 RNF169 XRCC5 XRCC5 SMARCAL1 SMARCAL1 A0A4W2CSP1 A0A4W2CSP1 RPA2 RPA2 SMC5 SMC5 SAMHD1 SAMHD1 A0A4W2CWS1 A0A4W2CWS1 A0A4W2CX26 A0A4W2CX26 PARP1 PARP1 PARP2 PARP2 RAD51 RAD51 SHLD2 SHLD2 ERCC6 ERCC6 SLF1 SLF1 A0A4W2D2X3 A0A4W2D2X3 RNF168 RNF168 CBX5 CBX5 ATF2 ATF2 NKX3-1 NKX3-1 A0A4W2DA03 A0A4W2DA03 POLK POLK SMARCAD1 SMARCAD1 ACTR3 ACTR3 A0A4W2DHA5 A0A4W2DHA5 A0A4W2DJN4 A0A4W2DJN4 SIRT6 SIRT6 ZBTB7A ZBTB7A RAD18 RAD18 PRPF19 PRPF19 ZGRF1 ZGRF1 WAS WAS RBBP8 RBBP8 POLH POLH SMCHD1 SMCHD1 A0A4W2DY12 A0A4W2DY12 TP53BP1 TP53BP1 SMARCA5 SMARCA5 POLL POLL C17orf53 C17orf53 CGAS CGAS VCP VCP SMC6 SMC6 ARPC2 ARPC2 HUS1 HUS1 SIRT7 SIRT7 ARPC3 ARPC3 PNKP PNKP A0A4W2EMP6 A0A4W2EMP6 ESCO2 ESCO2 REC114 REC114 HELQ HELQ A0A4W2EVH0 A0A4W2EVH0 RPA3 RPA3 RIF1 RIF1 UBQLN4 UBQLN4 LMNA LMNA XRCC4 XRCC4 A0A4W2F3C1 A0A4W2F3C1 A0A4W2F400 A0A4W2F400 NABP2 NABP2 APLF APLF INTS3 INTS3 OARD1 OARD1 INIP INIP TIMELESS TIMELESS CBX3 CBX3 ARPC5 ARPC5 AUNIP AUNIP MMS22L MMS22L HELB HELB RNF8 RNF8 RPA1 RPA1 DDB2 DDB2 TP53 TP53
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PARP3Poly [ADP-ribose] polymerase. (515 aa)
A0A4W2BP37Uncharacterized protein. (74 aa)
XPCXPC complex subunit, DNA damage recognition and repair factor. (932 aa)
DDB1Damage specific DNA binding protein 1. (1506 aa)
PAXXPAXX non-homologous end joining factor. (224 aa)
CUL5Cullin 5; Belongs to the cullin family. (780 aa)
RFWD3Ring finger and WD repeat domain 3. (790 aa)
PHF1PHD finger protein 1. (603 aa)
TRAIPTRAF interacting protein. (472 aa)
MRE11MRE11 homolog, double strand break repair nuclease; Belongs to the MRE11/RAD32 family. (943 aa)
SLF2SMC5-SMC6 complex localization factor 2. (1167 aa)
ARPC1AWD_REPEATS_REGION domain-containing protein. (430 aa)
TONSLTonsoku like, DNA repair protein. (1375 aa)
ARPC4Actin-related protein 2/3 complex subunit 4; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament; Belongs to the ARPC4 family. (168 aa)
WDR76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (627 aa)
WRAP53WD repeat containing antisense to TP53. (540 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (809 aa)
WDR70WD repeat domain 70. (652 aa)
UFL1UFM1 specific ligase 1. (792 aa)
CNTD1Cyclin N-terminal domain containing 1. (328 aa)
KAT7Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (611 aa)
RNF169Ring finger protein 169. (708 aa)
XRCC5X-ray repair cross complementing 5. (813 aa)
SMARCAL1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (937 aa)
A0A4W2CSP1Uncharacterized protein. (319 aa)
RPA2RPA_C domain-containing protein. (270 aa)
SMC5SMC_N domain-containing protein. (1197 aa)
SAMHD1SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1. (608 aa)
A0A4W2CWS1RPA_C domain-containing protein. (253 aa)
A0A4W2CX26Uncharacterized protein. (284 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1016 aa)
PARP2Poly [ADP-ribose] polymerase. (577 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
SHLD2Shieldin complex subunit 2. (962 aa)
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1544 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1175 aa)
A0A4W2D2X3Zinc-hook domain-containing protein. (1440 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] (573 aa)
CBX5Chromobox 5. (191 aa)
ATF2Activating transcription factor 2. (447 aa)
NKX3-1NK3 homeobox 1. (239 aa)
A0A4W2DA03Uncharacterized protein; Belongs to the actin family. (416 aa)
POLKDNA polymerase kappa. (911 aa)
SMARCAD1Uncharacterized protein. (1029 aa)
ACTR3Uncharacterized protein; Belongs to the actin family. (418 aa)
A0A4W2DHA5Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (159 aa)
A0A4W2DJN4Uncharacterized protein; Belongs to the actin family. (356 aa)
SIRT6Sirtuin 6. (391 aa)
ZBTB7AZinc finger and BTB domain containing 7A. (567 aa)
RAD18RAD18 E3 ubiquitin protein ligase. (501 aa)
PRPF19Pre-mRNA processing factor 19. (504 aa)
ZGRF1Zinc finger GRF-type containing 1. (2171 aa)
WASWASP actin nucleation promoting factor. (559 aa)
RBBP8RB binding protein 8, endonuclease. (859 aa)
POLHDNA polymerase eta. (711 aa)
SMCHD1Structural maintenance of chromosomes flexible hinge domain containing 1. (1997 aa)
A0A4W2DY12RPA_C domain-containing protein. (270 aa)
TP53BP1Tumor protein p53 binding protein 1. (1966 aa)
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1051 aa)
POLLDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (575 aa)
C17orf53Chromosome 17 open reading frame 53. (654 aa)
CGASCyclic GMP-AMP synthase. (513 aa)
VCPValosin containing protein; Belongs to the AAA ATPase family. (816 aa)
SMC6Structural maintenance of chromosomes 6. (1098 aa)
ARPC2Arp2/3 complex 34 kDa subunit; Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (300 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (280 aa)
SIRT7Sirtuin 7. (420 aa)
ARPC3Actin-related protein 2/3 complex subunit 3; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (190 aa)
PNKPPolynucleotide kinase 3'-phosphatase. (550 aa)
A0A4W2EMP6Uncharacterized protein. (232 aa)
ESCO2Establishment of sister chromatid cohesion N-acetyltransferase 2. (610 aa)
REC114REC114 meiotic recombination protein. (255 aa)
HELQHelicase, POLQ like. (1092 aa)
A0A4W2EVH0Uncharacterized protein. (420 aa)
RPA3Replication protein A3. (121 aa)
RIF1Replication timing regulatory factor 1. (2465 aa)
UBQLN4Ubiquilin 4. (734 aa)
LMNALamin A/C; Belongs to the intermediate filament family. (664 aa)
XRCC4X-ray repair cross complementing 4. (333 aa)
A0A4W2F3C1RPA_C domain-containing protein. (250 aa)
A0A4W2F400Uncharacterized protein. (410 aa)
NABP2Nucleic acid binding protein 2. (211 aa)
APLFAprataxin and PNKP like factor. (509 aa)
INTS3Integrator complex subunit 3. (1040 aa)
OARD1O-acyl-ADP-ribose deacylase 1. (152 aa)
INIPINTS3 and NABP interacting protein. (104 aa)
TIMELESSTimeless circadian regulator. (1213 aa)
CBX3Uncharacterized protein. (183 aa)
ARPC5Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (151 aa)
AUNIPAurora kinase A and ninein interacting protein. (357 aa)
MMS22LMMS22 like, DNA repair protein. (1243 aa)
HELBDNA helicase B. (1136 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (504 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
DDB2Damage specific DNA binding protein 2. (426 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (499 aa)
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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