(86 nodes) Nuclear speck network (Bos indicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HABP4	Hyaluronan binding protein 4. (417 aa)
	AKAP17A	A-kinase anchoring protein 17A. (701 aa)
	ZNF830	Zinc finger protein 830. (373 aa)
	A0A4W2BTC4	Uncharacterized protein. (156 aa)
	TCIM	Transcriptional and immune response regulator. (106 aa)
	RBM14	RNA binding motif protein 14. (669 aa)
	A0A4W2C1B0	RRM domain-containing protein. (185 aa)
	ALKBH5	AlkB homolog 5, RNA demethylase. (394 aa)
	NOC3L	Nucleolar complex protein 3 homolog. (799 aa)
	DDX17	DEAD-box helicase 17; Belongs to the DEAD box helicase family. (650 aa)
	ZC3H18	Zinc finger CCCH-type containing 18. (1033 aa)
	ZC3H13	Zinc finger CCCH-type containing 13. (1651 aa)
	WBP4	WW domain binding protein 4. (377 aa)
	NXF1	Nuclear RNA export factor 1. (620 aa)
	PNISR	PNN interacting serine and arginine rich protein. (814 aa)
	SNRNP70	Small nuclear ribonucleoprotein U1 subunit 70. (440 aa)
	EPAS1	Endothelial PAS domain protein 1. (928 aa)
	HOXA6	Homeobox A6. (233 aa)
	DZIP1	DAZ interacting zinc finger protein 1. (911 aa)
	SRSF6	Serine and arginine rich splicing factor 6. (345 aa)
	A0A4W2D145	Uncharacterized protein. (376 aa)
	YLPM1	YLP motif containing 1. (2145 aa)
	RBM25	RNA binding motif protein 25. (843 aa)
	FASTK	Fas activated serine/threonine kinase. (543 aa)
	SRSF10	Serine and arginine rich splicing factor 10. (262 aa)
	CSNK1A1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (394 aa)
	DHX36	DEAH-box helicase 36. (1010 aa)
	RBM11	RNA binding motif protein 11. (346 aa)
	SRSF11	Serine and arginine rich splicing factor 11. (482 aa)
	TRIM69	Tripartite motif containing 69. (502 aa)
	NRDE2	NRDE-2, necessary for RNA interference, domain containing. (1155 aa)
	ZC3H14	Zinc finger CCCH-type containing 14. (765 aa)
	SRPK2	SRSF protein kinase 2. (754 aa)
	NSRP1	Nuclear speckle splicing regulatory protein 1. (559 aa)
	A0A4W2DU26	Uncharacterized protein. (162 aa)
	SRPK1	SRSF protein kinase 1. (686 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (614 aa)
	A0A4W2E078	RRM domain-containing protein. (154 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (125 aa)
	U2AF1	Uncharacterized protein. (237 aa)
	HSPB3	Heat shock protein family B (small) member 3; Belongs to the small heat shock protein (HSP20) family. (149 aa)
	A0A4W2E8C0	RRM domain-containing protein. (963 aa)
	CDK13	Cyclin dependent kinase 13. (1512 aa)
	WT1	WT1 transcription factor. (518 aa)
	SRSF4	Serine and arginine rich splicing factor 4. (493 aa)
	BASP1	Uncharacterized protein. (381 aa)
	RBM39	RNA binding motif protein 39. (530 aa)
	A0A4W2EGA6	Uncharacterized protein. (202 aa)
	SDCBP2	Peptidylprolyl isomerase. (325 aa)
	FTO	FTO alpha-ketoglutarate dependent dioxygenase. (521 aa)
	PRPF6	Pre-mRNA processing factor 6. (1044 aa)
	CPSF6	Cleavage and polyadenylation specific factor 6. (724 aa)
	FYTTD1	Forty-two-three domain containing 1. (318 aa)
	A0A4W2EQN1	Phorbol-ester/DAG-type domain-containing protein. (322 aa)
	RBM15	RNA binding motif protein 15. (962 aa)
	SRSF5	Serine and arginine rich splicing factor 5. (272 aa)
	A0A4W2EU39	Uncharacterized protein. (270 aa)
	PIP5K1A	Phosphatidylinositol-4-phosphate 5-kinase type 1 alpha. (562 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	MAML1	Mastermind like transcriptional coactivator 1. (1013 aa)
	YTHDC1	YTH domain containing 1. (736 aa)
	SON	SON DNA binding protein. (2455 aa)
	NR3C1	Nuclear receptor subfamily 3 group C member 1. (782 aa)
	DYRK1A	Dual specificity tyrosine phosphorylation regulated kinase 1A. (763 aa)
	SARNP	SAP domain containing ribonucleoprotein. (210 aa)
	SF3A1	Splicing factor 3a subunit 1. (793 aa)
	WBP11	Uncharacterized protein. (640 aa)
	DUSP11	Dual specificity phosphatase 11. (331 aa)
	ELL	Elongation factor for RNA polymerase II. (616 aa)
	FAM76B	Family with sequence similarity 76 member B. (316 aa)
	APEX1	DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends. (318 aa)
	DDX39A	DExD-box helicase 39A. (427 aa)
	SRSF1	Uncharacterized protein. (248 aa)
	POLDIP3	DNA polymerase delta interacting protein 3. (392 aa)
	HIF1A	Hypoxia inducible factor 1 subunit alpha. (842 aa)
	SRSF2	RRM domain-containing protein. (221 aa)
	GLIS2	GLIS family zinc finger 2. (524 aa)
	RAD54L2	RAD54 like 2. (1468 aa)
	RSRC1	Arginine and serine rich coiled-coil 1. (334 aa)
	RBM27	Uncharacterized protein. (1058 aa)
	DDX39B	DExD-box helicase 39B. (428 aa)
	RBM4	RNA binding motif protein 4. (362 aa)
	RBM23	RNA binding motif protein 23. (463 aa)
	CDK12	Cyclin dependent kinase 12. (1481 aa)
	MEF2C	Myocyte enhancer factor 2C. (483 aa)
	SCNM1	Sodium channel modifier 1. (195 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2BTC4	A0A4W2DU26	A0A4W2BTC4	A0A4W2DU26	Uncharacterized protein.	Uncharacterized protein.	0.638
A0A4W2BTC4	ALKBH5	A0A4W2BTC4	A0A4W2C1W1	Uncharacterized protein.	AlkB homolog 5, RNA demethylase.	0.542
A0A4W2BTC4	FTO	A0A4W2BTC4	A0A4W2EI20	Uncharacterized protein.	FTO alpha-ketoglutarate dependent dioxygenase.	0.491
A0A4W2BTC4	RBM15	A0A4W2BTC4	A0A4W2ERK4	Uncharacterized protein.	RNA binding motif protein 15.	0.641
A0A4W2BTC4	YTHDC1	A0A4W2BTC4	A0A4W2EWG3	Uncharacterized protein.	YTH domain containing 1.	0.505
A0A4W2BTC4	ZC3H13	A0A4W2BTC4	A0A4W2C741	Uncharacterized protein.	Zinc finger CCCH-type containing 13.	0.873
A0A4W2C1B0	A0A4W2E078	A0A4W2C1B0	A0A4W2E078	RRM domain-containing protein.	RRM domain-containing protein.	0.676
A0A4W2C1B0	CPSF6	A0A4W2C1B0	A0A4W2EJ04	RRM domain-containing protein.	Cleavage and polyadenylation specific factor 6.	0.522
A0A4W2C1B0	RBM23	A0A4W2C1B0	A0A4W2IEK4	RRM domain-containing protein.	RNA binding motif protein 23.	0.550
A0A4W2C1B0	RBM39	A0A4W2C1B0	A0A4W2EE94	RRM domain-containing protein.	RNA binding motif protein 39.	0.415
A0A4W2C1B0	SRSF1	A0A4W2C1B0	A0A4W2H1B4	RRM domain-containing protein.	Uncharacterized protein.	0.964
A0A4W2C1B0	SRSF11	A0A4W2C1B0	A0A4W2DH67	RRM domain-containing protein.	Serine and arginine rich splicing factor 11.	0.758
A0A4W2C1B0	SRSF2	A0A4W2C1B0	A0A4W2HER7	RRM domain-containing protein.	RRM domain-containing protein.	0.581
A0A4W2C1B0	SRSF3	A0A4W2C1B0	A0A4W2E085	RRM domain-containing protein.	Serine and arginine rich splicing factor 3.	0.676
A0A4W2C1B0	SRSF4	A0A4W2C1B0	A0A4W2ECE7	RRM domain-containing protein.	Serine and arginine rich splicing factor 4.	0.798
A0A4W2C1B0	SRSF5	A0A4W2C1B0	A0A4W2ERZ8	RRM domain-containing protein.	Serine and arginine rich splicing factor 5.	0.677
A0A4W2C1B0	SRSF6	A0A4W2C1B0	A0A4W2CY69	RRM domain-containing protein.	Serine and arginine rich splicing factor 6.	0.806
A0A4W2C1B0	YTHDC1	A0A4W2C1B0	A0A4W2EWG3	RRM domain-containing protein.	YTH domain containing 1.	0.461
A0A4W2D145	ALKBH5	A0A4W2D145	A0A4W2C1W1	Uncharacterized protein.	AlkB homolog 5, RNA demethylase.	0.542
A0A4W2D145	FTO	A0A4W2D145	A0A4W2EI20	Uncharacterized protein.	FTO alpha-ketoglutarate dependent dioxygenase.	0.491

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