(54 nodes) Assembly of collagen fibrils and other multimeric structures network (Bos indicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	COL24A1	Collagen type XXIV alpha 1 chain. (1709 aa)
	COL6A5	Collagen type VI alpha 5 chain. (2606 aa)
	PCOLCE	Procollagen C-endopeptidase enhancer. (476 aa)
	CD151	Tetraspanin. (385 aa)
	TLL1	Metalloendopeptidase. (1013 aa)
	LOXL4	Lysyl oxidase like 4. (758 aa)
	LAMB3	Laminin subunit beta 3. (1172 aa)
	COL9A1	Collagen type IX alpha 1 chain. (922 aa)
	COL5A1	Collagen type V alpha 1 chain. (1847 aa)
	COL14A1	Collagen type XIV alpha 1 chain. (1805 aa)
	LOXL1	Lysyl oxidase like 1. (592 aa)
	MEP1A	Meprin A subunit. (749 aa)
	COL4A3	Collagen type IV alpha 3 chain. (1649 aa)
	COL4A2	Collagen type IV alpha 2 chain. (1824 aa)
	C1QTNF7	C1q and TNF related 7. (296 aa)
	A0A4W2D4I7	Fibrillar collagen NC1 domain-containing protein. (1841 aa)
	PXDN	Peroxidasin. (1479 aa)
	BMP1	Metalloendopeptidase. (988 aa)
	COL9A2	Collagen type IX alpha 2 chain. (688 aa)
	COL8A2	Collagen type VIII alpha 2 chain. (704 aa)
	COL9A3	Uncharacterized protein. (684 aa)
	MEGF11	Multiple EGF like domains 11. (1151 aa)
	COL11A2	Collagen type XI alpha 2 chain. (1736 aa)
	COL17A1	Collagen type XVII alpha 1 chain. (1467 aa)
	MEP1B	Meprin A subunit. (700 aa)
	TLL2	Metalloendopeptidase. (1020 aa)
	COL12A1	Collagen type XII alpha 1 chain. (3077 aa)
	LAMC2	Laminin subunit gamma 2. (1191 aa)
	LAMA3	Laminin subunit alpha 3. (3334 aa)
	HHIPL2	HHIP like 2. (766 aa)
	JAZF1	JAZF zinc finger 1. (252 aa)
	COL4A1	Collagen type IV alpha 1 chain. (1669 aa)
	COL2A1	Collagen type II alpha 1 chain. (1487 aa)
	COL10A1	Collagen type X alpha 1 chain. (673 aa)
	LOX	Lysyl oxidase. (418 aa)
	A0A4W2EV96	Uncharacterized protein. (1601 aa)
	A0A4W2EVZ2	Uncharacterized protein. (540 aa)
	COL8A1	Collagen type VIII alpha 1 chain. (745 aa)
	COL6A6	Collagen type VI alpha 6 chain. (2270 aa)
	COL6A2	Collagen type VI alpha 2 chain. (1027 aa)
	COL5A2	Collagen type V alpha 2 chain. (1499 aa)
	COL3A1	Collagen type III alpha 1 chain. (1466 aa)
	COL1A1	Collagen type I alpha 1 chain. (1584 aa)
	LOXL3	Lysyl oxidase like 3. (752 aa)
	COL1A2	Collagen type I alpha 2 chain. (1364 aa)
	COL6A1	Uncharacterized protein. (1027 aa)
	LOC113892681	C1q domain-containing protein. (215 aa)
	LOXL2	Lysyl oxidase like 2. (774 aa)
	LOC113892682	C1q domain-containing protein. (212 aa)
	COL11A1	Collagen type XI alpha 1 chain. (1817 aa)
	C1QTNF2	C1q and TNF related 2. (321 aa)
	COL5A3	Collagen type V alpha 3 chain. (1745 aa)
	A0A4W2DNS4	Uncharacterized protein. (1510 aa)
	LOC113892680	C1q domain-containing protein. (191 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2D4I7	COL17A1	A0A4W2D4I7	A0A4W2DUL2	Fibrillar collagen NC1 domain-containing protein.	Collagen type XVII alpha 1 chain.	0.571
A0A4W2D4I7	COL4A2	A0A4W2D4I7	A0A4W2CUL5	Fibrillar collagen NC1 domain-containing protein.	Collagen type IV alpha 2 chain.	0.435
A0A4W2D4I7	COL5A2	A0A4W2D4I7	A0A4W2F3P9	Fibrillar collagen NC1 domain-containing protein.	Collagen type V alpha 2 chain.	0.403
A0A4W2D4I7	COL6A2	A0A4W2D4I7	A0A4W2F3E4	Fibrillar collagen NC1 domain-containing protein.	Collagen type VI alpha 2 chain.	0.479
A0A4W2D4I7	COL8A2	A0A4W2D4I7	A0A4W2DAC5	Fibrillar collagen NC1 domain-containing protein.	Collagen type VIII alpha 2 chain.	0.411
A0A4W2DNS4	COL6A1	A0A4W2DNS4	A0A4W2G827	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A4W2EV96	A0A4W2EVZ2	A0A4W2EV96	A0A4W2EVZ2	Uncharacterized protein.	Uncharacterized protein.	0.919
A0A4W2EV96	COL11A1	A0A4W2EV96	A0A4W2DL09	Uncharacterized protein.	Collagen type XI alpha 1 chain.	0.569
A0A4W2EV96	COL11A2	A0A4W2EV96	A0A4W2DT54	Uncharacterized protein.	Collagen type XI alpha 2 chain.	0.535
A0A4W2EV96	COL12A1	A0A4W2EV96	A0A4W2E6T5	Uncharacterized protein.	Collagen type XII alpha 1 chain.	0.589
A0A4W2EV96	COL1A1	A0A4W2EV96	A0A4W2FAL4	Uncharacterized protein.	Collagen type I alpha 1 chain.	0.807
A0A4W2EV96	COL1A2	A0A4W2EV96	A0A4W2FTM9	Uncharacterized protein.	Collagen type I alpha 2 chain.	0.840
A0A4W2EV96	COL2A1	A0A4W2EV96	A0A4W2EIM8	Uncharacterized protein.	Collagen type II alpha 1 chain.	0.497
A0A4W2EV96	COL3A1	A0A4W2EV96	A0A4W2F3U8	Uncharacterized protein.	Collagen type III alpha 1 chain.	0.705
A0A4W2EV96	COL4A1	A0A4W2EV96	A0A4W2EID6	Uncharacterized protein.	Collagen type IV alpha 1 chain.	0.516
A0A4W2EV96	COL5A1	A0A4W2EV96	A0A4W2CAL5	Uncharacterized protein.	Collagen type V alpha 1 chain.	0.623
A0A4W2EV96	COL5A2	A0A4W2EV96	A0A4W2F3P9	Uncharacterized protein.	Collagen type V alpha 2 chain.	0.674
A0A4W2EV96	COL6A1	A0A4W2EV96	A0A4W2G827	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A4W2EV96	COL6A2	A0A4W2EV96	A0A4W2F3E4	Uncharacterized protein.	Collagen type VI alpha 2 chain.	0.924
A0A4W2EV96	COL8A2	A0A4W2EV96	A0A4W2DAC5	Uncharacterized protein.	Collagen type VIII alpha 2 chain.	0.406

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