STRINGSTRING
LOC113894093 LOC113894093 GTF2H1 GTF2H1 MTA2 MTA2 POLR2L POLR2L RRN3 RRN3 MBD2 MBD2 A0A4W2BY98 A0A4W2BY98 TTF1 TTF1 POLR2E POLR2E A0A4W2BZU2 A0A4W2BZU2 A0A4W2C1I5 A0A4W2C1I5 EHMT2 EHMT2 MTA1 MTA1 A0A4W2C3R7 A0A4W2C3R7 LOC113881683 LOC113881683 LOC113881951 LOC113881951 LOC113887723 LOC113887723 LOC113881235 LOC113881235 GTF2H4 GTF2H4 POLR2F POLR2F TAF1C TAF1C A0A4W2C6E9 A0A4W2C6E9 A0A4W2C6H8 A0A4W2C6H8 A0A4W2C7C4 A0A4W2C7C4 A0A4W2CAS1 A0A4W2CAS1 POLR1A POLR1A A0A4W2CCQ9 A0A4W2CCQ9 GTF2H3 GTF2H3 A0A4W2CDJ5 A0A4W2CDJ5 CAVIN1 CAVIN1 MBD3L1 MBD3L1 A0A4W2CG17 A0A4W2CG17 A0A4W2CGH5 A0A4W2CGH5 CD3EAP CD3EAP A0A4W2CHW6 A0A4W2CHW6 POLR1E POLR1E TAF1A TAF1A A0A4W2CUJ6 A0A4W2CUJ6 A0A4W2CUU2 A0A4W2CUU2 RBBP4 RBBP4 A0A4W2EYQ3 A0A4W2EYQ3 A0A4W2CXN3 A0A4W2CXN3 TAF1B TAF1B ERCC6 ERCC6 A0A4W2D280 A0A4W2D280 MTA3 MTA3 A0A4W2D6U7 A0A4W2D6U7 LOC113887714 LOC113887714 LOC113890991 LOC113890991 LOC113894257 LOC113894257 A0A4W2DBN9 A0A4W2DBN9 A0A4W2DBR6 A0A4W2DBR6 LOC113891642 LOC113891642 A0A4W2DGW5 A0A4W2DGW5 GATAD2B GATAD2B CCNH CCNH A0A4W2DKR7 A0A4W2DKR7 A0A4W2DLX6 A0A4W2DLX6 ERCC3 ERCC3 LOC113886089 LOC113886089 A0A4W2DQY3 A0A4W2DQY3 HIST2H2BF HIST2H2BF A0A4W2DRH1 A0A4W2DRH1 A0A4W2DS81 A0A4W2DS81 A0A4W2DT21 A0A4W2DT21 MBD3 MBD3 GATAD2A GATAD2A A0A4W2DVZ3 A0A4W2DVZ3 A0A4W2DXQ9 A0A4W2DXQ9 LOC113888629 LOC113888629 A0A4W2DZL0 A0A4W2DZL0 POLR1C POLR1C DMTF1 DMTF1 A0A4W2E2F4 A0A4W2E2F4 HIST1H2AK HIST1H2AK CHD3 CHD3 ZNRD1 ZNRD1 A0A4W2E576 A0A4W2E576 LOC113894712 LOC113894712 A0A4W2E9V8 A0A4W2E9V8 LOC113886072 LOC113886072 A0A4W2ECJ3 A0A4W2ECJ3 HDAC1 HDAC1 H2AFV H2AFV CHD4 CHD4 A0A4W2EHM9 A0A4W2EHM9 UBTF UBTF A0A4W2EKY1 A0A4W2EKY1 CHD5 CHD5 A0A4W2EMF1 A0A4W2EMF1 A0A4W2EN35 A0A4W2EN35 A0A4W2END9 A0A4W2END9 TBP TBP A0A4W2EPN0 A0A4W2EPN0 A0A4W2EQY6 A0A4W2EQY6 A0A4W2EST9 A0A4W2EST9 LOC113895600 LOC113895600 HIST2H2BE HIST2H2BE HIST2H2AC HIST2H2AC LOC113891914 LOC113891914 HIST3H2BB HIST3H2BB A0A4W2EYF3 A0A4W2EYF3 UBN2 UBN2 A0A4W2ILK0 A0A4W2ILK0 MAPK3 MAPK3 LOC113887118 LOC113887118 LOC113878849 LOC113878849 CDK7 CDK7 HIST1H2AC HIST1H2AC A0A4W2HJD3 A0A4W2HJD3 TBPL2 TBPL2 HDAC2 HDAC2 HIST3H3 HIST3H3 TBPL1 TBPL1 A0A4W2H524 A0A4W2H524 A0A4W2H495 A0A4W2H495 LOC113902148 LOC113902148 POLR2H POLR2H ERCC2 ERCC2 TWISTNB TWISTNB CBX3 CBX3 POLR1B POLR1B TAF1D TAF1D A0A4W2FP88 A0A4W2FP88 HIST1H2BA HIST1H2BA A0A4W2FLL3 A0A4W2FLL3 LOC113881709 LOC113881709 H2AFJ H2AFJ MNAT1 MNAT1 LOC113877969 LOC113877969 A0A4W2F4C0 A0A4W2F4C0 A0A4W2F316 A0A4W2F316 AIRE AIRE A0A4W2F1V1 A0A4W2F1V1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC113894093Histone H2A; Belongs to the histone H2A family. (128 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
MTA2Metastasis associated 1 family member 2. (672 aa)
POLR2LRNA polymerase II subunit L. (67 aa)
RRN3RRN3 homolog, RNA polymerase I transcription factor. (651 aa)
MBD2Methyl-CpG binding domain protein 2. (414 aa)
A0A4W2BY98Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
TTF1Transcription termination factor 1. (764 aa)
POLR2ERNA polymerase II subunit E. (288 aa)
A0A4W2BZU2Histone domain-containing protein; Belongs to the histone H2B family. (165 aa)
A0A4W2C1I5HMG box domain-containing protein. (171 aa)
EHMT2Euchromatic histone lysine methyltransferase 2. (1389 aa)
MTA1Metastasis associated 1. (715 aa)
A0A4W2C3R7Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC113881683Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC113881951Histone H3; Belongs to the histone H3 family. (136 aa)
LOC113887723Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC113881235Histone H2B; Belongs to the histone H2B family. (127 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
POLR2FUncharacterized protein. (127 aa)
TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C. (1037 aa)
A0A4W2C6E9Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
A0A4W2C6H8Histone H2B; Belongs to the histone H2B family. (147 aa)
A0A4W2C7C4Histone H2B; Belongs to the histone H2B family. (126 aa)
A0A4W2CAS1Histone domain-containing protein; Belongs to the histone H2B family. (122 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1717 aa)
A0A4W2CCQ9Uncharacterized protein. (303 aa)
GTF2H3General transcription factor IIH subunit 3. (402 aa)
A0A4W2CDJ5Histone H2B; Belongs to the histone H2B family. (122 aa)
CAVIN1Caveolae associated protein 1. (456 aa)
MBD3L1Methyl-CpG binding domain protein 3 like 1. (194 aa)
A0A4W2CG17Histone domain-containing protein; Belongs to the histone H2B family. (124 aa)
A0A4W2CGH5Histone H2B; Belongs to the histone H2B family. (125 aa)
CD3EAPCD3e molecule associated protein. (532 aa)
A0A4W2CHW6Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
POLR1ERNA polymerase I subunit E. (419 aa)
TAF1ATATA-box binding protein associated factor, RNA polymerase I subunit A. (450 aa)
A0A4W2CUJ6Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A0A4W2CUU2Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
RBBP4RB binding protein 4, chromatin remodeling factor. (425 aa)
A0A4W2EYQ3CAF1C_H4-bd domain-containing protein. (93 aa)
A0A4W2CXN3Histone domain-containing protein; Belongs to the histone H2B family. (67 aa)
TAF1BTATA-box binding protein associated factor, RNA polymerase I subunit B. (590 aa)
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1544 aa)
A0A4W2D280Histone H2B; Belongs to the histone H2B family. (67 aa)
MTA3Metastasis associated 1 family member 3. (664 aa)
A0A4W2D6U7Histone H2B; Belongs to the histone H2B family. (67 aa)
LOC113887714Histone H2A; Belongs to the histone H2A family. (130 aa)
LOC113890991Histone H2B; Belongs to the histone H2B family. (122 aa)
LOC113894257Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A0A4W2DBN9Histone H2B; Belongs to the histone H2B family. (149 aa)
A0A4W2DBR6Histone domain-containing protein; Belongs to the histone H2B family. (67 aa)
LOC113891642Histone domain-containing protein. (136 aa)
A0A4W2DGW5Histone domain-containing protein; Belongs to the histone H2B family. (118 aa)
GATAD2BGATA zinc finger domain containing 2B. (592 aa)
CCNHCyclin H; Belongs to the cyclin family. (329 aa)
A0A4W2DKR7HMG box domain-containing protein. (174 aa)
A0A4W2DLX6Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (780 aa)
LOC113886089Uncharacterized protein. (409 aa)
A0A4W2DQY3HMG box domain-containing protein. (356 aa)
HIST2H2BFHistone H2B; Belongs to the histone H2B family. (140 aa)
A0A4W2DRH1Histone H2B; Belongs to the histone H2B family. (126 aa)
A0A4W2DS81Histone domain-containing protein; Belongs to the histone H2B family. (112 aa)
A0A4W2DT21Histone domain-containing protein; Belongs to the histone H2B family. (69 aa)
MBD3Methyl-CpG binding domain protein 3. (289 aa)
GATAD2AGATA zinc finger domain containing 2A. (876 aa)
A0A4W2DVZ3Histone domain-containing protein; Belongs to the histone H2B family. (67 aa)
A0A4W2DXQ9Histone domain-containing protein; Belongs to the histone H2B family. (153 aa)
LOC113888629Histone H2B; Belongs to the histone H2B family. (126 aa)
A0A4W2DZL0Histone H2B; Belongs to the histone H2B family. (126 aa)
POLR1CRNA polymerase I and III subunit C. (346 aa)
DMTF1Cyclin D binding myb like transcription factor 1. (775 aa)
A0A4W2E2F4Histone H2B; Belongs to the histone H2B family. (67 aa)
HIST1H2AKHistone H2A; Belongs to the histone H2A family. (130 aa)
CHD3Chromodomain helicase DNA binding protein 3. (2059 aa)
ZNRD1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
A0A4W2E576Histone H2B; Belongs to the histone H2B family. (67 aa)
LOC113894712Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
A0A4W2E9V8Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
LOC113886072HMG box domain-containing protein. (404 aa)
A0A4W2ECJ3Chromo domain-containing protein. (99 aa)
HDAC1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (513 aa)
H2AFVHistone H2A; Belongs to the histone H2A family. (128 aa)
CHD4Uncharacterized protein. (1920 aa)
A0A4W2EHM9Uncharacterized protein. (194 aa)
UBTFUpstream binding transcription factor. (757 aa)
A0A4W2EKY1Histone H2B; Belongs to the histone H2B family. (67 aa)
CHD5Chromodomain helicase DNA binding protein 5. (1953 aa)
A0A4W2EMF1Uncharacterized protein. (286 aa)
A0A4W2EN35Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
A0A4W2END9Histone H2B; Belongs to the histone H2B family. (67 aa)
TBPUncharacterized protein. (318 aa)
A0A4W2EPN0Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
A0A4W2EQY6Chromo domain-containing protein. (73 aa)
A0A4W2EST9Histone H3; Belongs to the histone H3 family. (136 aa)
LOC113895600Histone H2B; Belongs to the histone H2B family. (126 aa)
HIST2H2BEHistone H2B; Belongs to the histone H2B family. (126 aa)
HIST2H2ACHistone H2A; Belongs to the histone H2A family. (129 aa)
LOC113891914Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
HIST3H2BBHistone H2B; Belongs to the histone H2B family. (126 aa)
A0A4W2EYF3Uncharacterized protein. (181 aa)
UBN2Ubinuclein 2. (1296 aa)
A0A4W2ILK0Histone domain-containing protein; Belongs to the histone H2B family. (118 aa)
MAPK3Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (456 aa)
LOC113887118Histone H2A; Belongs to the histone H2A family. (109 aa)
LOC113878849General transcription factor IIH subunit. (405 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
HIST1H2ACHistone H2A; Belongs to the histone H2A family. (130 aa)
A0A4W2HJD3Histone domain-containing protein; Belongs to the histone H2B family. (126 aa)
TBPL2TATA-box binding protein like 2. (325 aa)
HDAC2Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (488 aa)
HIST3H3Histone H3; Belongs to the histone H3 family. (136 aa)
TBPL1TATA-box binding protein like 1. (186 aa)
A0A4W2H524Histone domain-containing protein; Belongs to the histone H2B family. (67 aa)
A0A4W2H495Histone H2A; Belongs to the histone H2A family. (93 aa)
LOC113902148Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit. (800 aa)
TWISTNBTWIST neighbor. (331 aa)
CBX3Uncharacterized protein. (183 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1079 aa)
TAF1DTATA-box binding protein associated factor, RNA polymerase I subunit D. (274 aa)
A0A4W2FP88Histone domain-containing protein. (184 aa)
HIST1H2BAHistone H2B; Belongs to the histone H2B family. (127 aa)
A0A4W2FLL3Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (99 aa)
LOC113881709Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
H2AFJHistone H2A; Belongs to the histone H2A family. (129 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
LOC113877969Histone H3; Belongs to the histone H3 family. (136 aa)
A0A4W2F4C0Histone H2A; Belongs to the histone H2A family. (130 aa)
A0A4W2F316Histone domain-containing protein; Belongs to the histone H2B family. (112 aa)
AIREAutoimmune regulator. (565 aa)
A0A4W2F1V1Histone domain-containing protein; Belongs to the histone H2B family. (67 aa)
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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