STRINGSTRING
A0A4W2DEF9 A0A4W2DEF9 UPK3BL2 UPK3BL2 SUPT6H SUPT6H ELOB ELOB GTF2H1 GTF2H1 NELFB NELFB POLR2L POLR2L POLR2E POLR2E C6orf15 C6orf15 NELFE NELFE GTF2H4 GTF2H4 POLR2F POLR2F CINP CINP POLR2A POLR2A CCNK CCNK A0A4W2CCR6 A0A4W2CCR6 GTF2H3 GTF2H3 A0A4W2CET4 A0A4W2CET4 PAF1 PAF1 SSRP1 SSRP1 A0A4W2CPD5 A0A4W2CPD5 A0A4W2CWQ4 A0A4W2CWQ4 CDC73 CDC73 RTF1 RTF1 A0A4W2D3G7 A0A4W2D3G7 GTF2F1 GTF2F1 MLLT1 MLLT1 SLC39A13 SLC39A13 NELFA NELFA TCEANC2 TCEANC2 POLR2J POLR2J A0A4W2DMZ8 A0A4W2DMZ8 ERCC3 ERCC3 A0A4W2DQT9 A0A4W2DQT9 A0A4W2DUD8 A0A4W2DUD8 ELOA ELOA PRF1 PRF1 A0A4W2DZY8 A0A4W2DZY8 SUPT5H SUPT5H A0A4W2E769 A0A4W2E769 A0A4W2E7G3 A0A4W2E7G3 ELOC ELOC A0A4W2E9K6 A0A4W2E9K6 LEO1 LEO1 NCBP1 NCBP1 A0A4W2EHM9 A0A4W2EHM9 POLR2I POLR2I A0A4W2EMF1 A0A4W2EMF1 MLLT3 MLLT3 AFF1 AFF1 CCNT2 CCNT2 POLR2D POLR2D POLR2B POLR2B MNAT1 MNAT1 ELL ELL CTR9 CTR9 CDK9 CDK9 POLR2C POLR2C TCEA2 TCEA2 CCNT1 CCNT1 ERCC2 ERCC2 POLR2H POLR2H SUPT16H SUPT16H GTF2F2 GTF2F2 A0A4W2GZ03 A0A4W2GZ03 NCBP2 NCBP2 TCEA3 TCEA3 AFF4 AFF4 LOC113887708 LOC113887708 WDR61 WDR61 POLR2G POLR2G CDK7 CDK7 LOC113878849 LOC113878849 NELFCD NELFCD TCEA1 TCEA1 A0A4W2IG83 A0A4W2IG83 EAF2 EAF2 IWS1 IWS1 CCNH CCNH EAF1 EAF1 A0A4W2DJ46 A0A4W2DJ46
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A0A4W2DEF9General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (257 aa)
UPK3BL2Uncharacterized protein. (329 aa)
SUPT6HTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1729 aa)
ELOBUncharacterized protein. (126 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
NELFBNegative elongation factor complex member B. (629 aa)
POLR2LRNA polymerase II subunit L. (67 aa)
POLR2ERNA polymerase II subunit E. (288 aa)
C6orf15Chromosome 6 open reading frame 15. (295 aa)
NELFENegative elongation factor complex member E. (381 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
POLR2FUncharacterized protein. (127 aa)
CINPUncharacterized protein. (212 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2019 aa)
CCNKCyclin K; Belongs to the cyclin family. (600 aa)
A0A4W2CCR6Uncharacterized protein. (584 aa)
GTF2H3General transcription factor IIH subunit 3. (402 aa)
A0A4W2CET4Uncharacterized protein. (58 aa)
PAF1PAF1 homolog, Paf1/RNA polymerase II complex component. (532 aa)
SSRP1Structure specific recognition protein 1. (852 aa)
A0A4W2CPD5Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (109 aa)
A0A4W2CWQ4WD_REPEATS_REGION domain-containing protein. (191 aa)
CDC73Cell division cycle 73. (531 aa)
RTF1RTF1 homolog, Paf1/RNA polymerase II complex component. (714 aa)
A0A4W2D3G7Ubiquitin-like domain-containing protein. (66 aa)
GTF2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (517 aa)
MLLT1MLLT1 super elongation complex subunit. (649 aa)
SLC39A13Solute carrier family 39 member 13. (372 aa)
NELFANegative elongation factor complex member A. (544 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain containing 2. (223 aa)
POLR2JRNA_pol_L_2 domain-containing protein. (248 aa)
A0A4W2DMZ8Skp1_POZ domain-containing protein. (72 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (780 aa)
A0A4W2DQT9TFIIF_beta domain-containing protein. (115 aa)
A0A4W2DUD8Uncharacterized protein. (312 aa)
ELOAElongin A. (920 aa)
PRF1Perforin 1. (559 aa)
A0A4W2DZY8MOEP19 domain-containing protein. (598 aa)
SUPT5HTranscription elongation factor SPT5. (1087 aa)
A0A4W2E769Ubiquitin-like domain-containing protein. (118 aa)
A0A4W2E7G3RNA_pol_L_2 domain-containing protein. (119 aa)
ELOCElongin C; Belongs to the SKP1 family. (112 aa)
A0A4W2E9K6Spt4 domain-containing protein. (255 aa)
LEO1LEO1 homolog, Paf1/RNA polymerase II complex component. (668 aa)
NCBP1Nuclear cap binding protein subunit 1. (790 aa)
A0A4W2EHM9Uncharacterized protein. (194 aa)
POLR2IRNA polymerase II subunit I. (156 aa)
A0A4W2EMF1Uncharacterized protein. (286 aa)
MLLT3MLLT3 super elongation complex subunit. (567 aa)
AFF1AF4/FMR2 family member 1. (1229 aa)
CCNT2Cyclin T2; Belongs to the cyclin family. (824 aa)
POLR2DRNA polymerase II subunit D. (142 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
ELLElongation factor for RNA polymerase II. (616 aa)
CTR9CTR9 homolog, Paf1/RNA polymerase II complex component. (1173 aa)
CDK9Cyclin dependent kinase 9; Belongs to the protein kinase superfamily. (494 aa)
POLR2CRNA polymerase II subunit C. (275 aa)
TCEA2Transcription elongation factor A2. (356 aa)
CCNT1Cyclin T1; Belongs to the cyclin family. (727 aa)
ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit. (800 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit. (1047 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
A0A4W2GZ03Ubiquitin-like domain-containing protein. (113 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (156 aa)
TCEA3Transcription elongation factor A3. (349 aa)
AFF4AF4/FMR2 family member 4. (1443 aa)
LOC113887708Uncharacterized protein. (377 aa)
WDR61WD_REPEATS_REGION domain-containing protein. (323 aa)
POLR2GRNA polymerase II subunit G. (172 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (346 aa)
LOC113878849General transcription factor IIH subunit. (405 aa)
NELFCDUncharacterized protein. (589 aa)
TCEA1Transcription elongation factor A1. (301 aa)
A0A4W2IG83Ubiquitin-like domain-containing protein. (118 aa)
EAF2ELL associated factor 2. (263 aa)
IWS1Interacts with SUPT6H, CTD assembly factor 1. (847 aa)
CCNHCyclin H; Belongs to the cyclin family. (329 aa)
EAF1ELL associated factor 1. (354 aa)
A0A4W2DJ46Uncharacterized protein. (380 aa)
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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