100 items (Bos indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAD54L	RAD54 like. (749 aa)
	FSBP	Uncharacterized protein. (966 aa)
	DDX4	DEAD-box helicase 4; Belongs to the DEAD box helicase family. (735 aa)
	RECQL5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (987 aa)
	DDX25	DEAD-box helicase 25. (483 aa)
	TDRD9	Tudor domain containing 9. (1412 aa)
	DDX17	DEAD-box helicase 17; Belongs to the DEAD box helicase family. (650 aa)
	HELLS	Helicase, lymphoid specific. (837 aa)
	A0A4W2C1M3	Uncharacterized protein; Belongs to the DEAD box helicase family. (618 aa)
	DDX19B	DEAD-box helicase 19B. (538 aa)
	WRN	WRN RecQ like helicase. (1409 aa)
	DDX31	RNA helicase. (749 aa)
	DDX52	DExD-box helicase 52. (571 aa)
	BRIP1	BRCA1 interacting protein C-terminal helicase 1. (1172 aa)
	INO80	INO80 complex ATPase subunit. (1584 aa)
	DHX38	DEAH-box helicase 38. (1227 aa)
	CHD1	Chromodomain helicase DNA binding protein 1. (1710 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1544 aa)
	DDX23	DEAD-box helicase 23. (909 aa)
	DDX58	DExD/H-box helicase 58. (941 aa)
	ERCC6L2	Uncharacterized protein. (1558 aa)
	EIF4A2	Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (407 aa)
	SMARCAD1	Uncharacterized protein. (1029 aa)
	ZRANB3	Zinc finger RANBP2-type containing 3. (1096 aa)
	DHX36	DEAH-box helicase 36. (1010 aa)
	YTHDC2	YTH domain containing 2. (1429 aa)
	RECQL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (780 aa)
	DDX3X	DEAD-box helicase 3 X-linked; Belongs to the DEAD box helicase family. (645 aa)
	A0A4W2DLS5	RNA helicase. (670 aa)
	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit. (780 aa)
	A0A4W2DQ16	Uncharacterized protein; Belongs to the DEAD box helicase family. (693 aa)
	DDX41	DEAD-box helicase 41. (673 aa)
	DDX50	DExD-box helicase 50. (737 aa)
	SKIV2L	Ski2 like RNA helicase. (1246 aa)
	DDX11	DEAD/H-box helicase 11. (1012 aa)
	EIF4A3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (411 aa)
	BLM	BLM RecQ like helicase. (1430 aa)
	DDX54	ATP-dependent RNA helicase DDX54; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (945 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (614 aa)
	SMARCA5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1051 aa)
	DDX51	DEAD-box helicase 51; Belongs to the DEAD box helicase family. (649 aa)
	DDX55	RNA helicase. (601 aa)
	DHX16	DEAH-box helicase 16. (1045 aa)
	CHD3	Chromodomain helicase DNA binding protein 3. (2059 aa)
	DHX34	DExH-box helicase 34. (1146 aa)
	SRCAP	Uncharacterized protein. (3291 aa)
	DHX33	DEAH-box helicase 33. (705 aa)
	EP400	E1A binding protein p400. (3096 aa)
	DDX10	RNA helicase. (876 aa)
	ASCC3	Activating signal cointegrator 1 complex subunit 3. (2201 aa)
	CHD4	Uncharacterized protein. (1920 aa)
	CHD9	Chromodomain helicase DNA binding protein 9. (2900 aa)
	CHD5	Chromodomain helicase DNA binding protein 5. (1953 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2136 aa)
	DHX35	DEAH-box helicase 35. (703 aa)
	POLQ	DNA polymerase theta. (2585 aa)
	CHD8	Chromodomain-helicase-DNA-binding protein 8; DNA helicase that acts as a chromatin remodeling factor and regulates transcription. Acts as a transcription repressor by remodeling chromatin structure and recruiting histone H1 to target genes. Suppresses p53/TP53-mediated apoptosis by recruiting histone H1 and preventing p53/TP53 transactivation activity. Acts as a negative regulator of Wnt signaling pathway by regulating beta-catenin (CTNNB1) activity. Negatively regulates CTNNB1-targeted gene expression by being recruited specifically to the promoter regions of several CTNNB1 responsive [...] (2583 aa)
	DDX20	DEAD-box helicase 20. (875 aa)
	TTF2	Transcription termination factor 2. (1215 aa)
	CHD1L	Chromodomain helicase DNA binding protein 1 like. (897 aa)
	HELQ	Helicase, POLQ like. (1092 aa)
	A0A4W2EVM6	RNA helicase. (716 aa)
	DDX49	DEAD-box helicase 49; Belongs to the DEAD box helicase family. (483 aa)
	IFIH1	Interferon induced with helicase C domain 1. (1021 aa)
	HLTF	Helicase like transcription factor. (1009 aa)
	DDX47	DEAD-box helicase 47; Belongs to the DEAD box helicase family. (457 aa)
	CHD6	Chromodomain helicase DNA binding protein 6. (2721 aa)
	RTEL1	Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1266 aa)
	SMARCA2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2. (1572 aa)
	DDX56	DEAD-box helicase 56. (546 aa)
	DDX39A	DExD-box helicase 39A. (427 aa)
	DHX30	DExH-box helicase 30. (1220 aa)
	ERCC2	ERCC excision repair 2, TFIIH core complex helicase subunit. (800 aa)
	DHX57	DExH-box helicase 57. (1375 aa)
	SMARCA4	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4. (1639 aa)
	DDX6	DEAD-box helicase 6; Belongs to the DEAD box helicase family. (483 aa)
	HFM1	Helicase for meiosis 1. (1437 aa)
	RAD54L2	RAD54 like 2. (1468 aa)
	DDX46	DEAD-box helicase 46. (1032 aa)
	DDX39B	DExD-box helicase 39B. (428 aa)
	DDX21	DExD-box helicase 21. (784 aa)
	DHX40	DEAH-box helicase 40. (779 aa)
	DHX9	DExH-box helicase 9. (1287 aa)
	DHX58	DExH-box helicase 58. (680 aa)
	DICER1	Dicer 1, ribonuclease III; Belongs to the helicase family. Dicer subfamily. (1998 aa)
	CHD2	Uncharacterized protein. (1827 aa)
	DDX28	DEAD-box helicase 28. (541 aa)
	FANCM	FA complementation group M. (2084 aa)
	DDX42	DEAD-box helicase 42. (947 aa)
	MTREX	Mtr4 exosome RNA helicase. (1040 aa)
	DHX8	DEAH-box helicase 8. (1220 aa)
	CHD7	Chromodomain helicase DNA binding protein 7. (2990 aa)
	DDX59	DEAD-box helicase 59. (620 aa)
	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (937 aa)
	BTAF1	B-TFIID TATA-box binding protein associated factor 1. (1848 aa)
	DDX27	DEAD-box helicase 27; Belongs to the DEAD box helicase family. (794 aa)
	EIF4A1	Eukaryotic translation initiation factor 4A1; Belongs to the DEAD box helicase family. (406 aa)
	DDX24	DEAD-box helicase 24. (852 aa)
	DDX43	Uncharacterized protein; Belongs to the DEAD box helicase family. (643 aa)
	DHX29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1366 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2C1M3	DDX11	A0A4W2C1M3	A0A4W2DX51	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD/H-box helicase 11.	0.457
A0A4W2C1M3	DDX52	A0A4W2C1M3	A0A4W2BTC6	Uncharacterized protein; Belongs to the DEAD box helicase family.	DExD-box helicase 52.	0.420
A0A4W2C1M3	DHX16	A0A4W2C1M3	A0A4W2E248	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 16.	0.461
A0A4W2C1M3	DHX29	A0A4W2C1M3	A0A4W2CTT7	Uncharacterized protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.531
A0A4W2C1M3	DHX30	A0A4W2C1M3	A0A4W2GIK7	Uncharacterized protein; Belongs to the DEAD box helicase family.	DExH-box helicase 30.	0.480
A0A4W2C1M3	DHX33	A0A4W2C1M3	A0A4W2E845	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 33.	0.531
A0A4W2C1M3	DHX34	A0A4W2C1M3	A0A4W2E6U1	Uncharacterized protein; Belongs to the DEAD box helicase family.	DExH-box helicase 34.	0.464
A0A4W2C1M3	DHX35	A0A4W2C1M3	A0A4W2EN48	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 35.	0.531
A0A4W2C1M3	DHX36	A0A4W2C1M3	A0A4W2DFS3	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 36.	0.401
A0A4W2C1M3	DHX38	A0A4W2C1M3	A0A4W2CVT5	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 38.	0.531
A0A4W2C1M3	DHX40	A0A4W2C1M3	A0A4W2I9B8	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 40.	0.565
A0A4W2C1M3	DHX57	A0A4W2C1M3	A0A4W2GU52	Uncharacterized protein; Belongs to the DEAD box helicase family.	DExH-box helicase 57.	0.534
A0A4W2C1M3	DHX8	A0A4W2C1M3	A0A4W2CD58	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAH-box helicase 8.	0.531
A0A4W2DLS5	DDX10	A0A4W2DLS5	A0A4W2ECG9	RNA helicase.	RNA helicase.	0.960
A0A4W2DLS5	DDX17	A0A4W2DLS5	A0A4W2C453	RNA helicase.	DEAD-box helicase 17; Belongs to the DEAD box helicase family.	0.690
A0A4W2DLS5	DDX21	A0A4W2DLS5	A0A4W2I045	RNA helicase.	DExD-box helicase 21.	0.733
A0A4W2DLS5	DDX24	A0A4W2DLS5	A0A4W2CQW9	RNA helicase.	DEAD-box helicase 24.	0.933
A0A4W2DLS5	DDX27	A0A4W2DLS5	A0A4W2CNV2	RNA helicase.	DEAD-box helicase 27; Belongs to the DEAD box helicase family.	0.871
A0A4W2DLS5	DDX28	A0A4W2DLS5	A0A4W2CBE8	RNA helicase.	DEAD-box helicase 28.	0.647
A0A4W2DLS5	DDX31	A0A4W2DLS5	A0A4W2BVY3	RNA helicase.	RNA helicase.	0.814

page 1 of 96

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About