(56 nodes) SNARE interactions in vesicular transport network (Bos indicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHF1	PHD finger protein 1. (603 aa)
	STX7	Syntaxin 7; Belongs to the syntaxin family. (261 aa)
	STX19	Syntaxin 19; Belongs to the syntaxin family. (292 aa)
	ASF1B	Anti-silencing function 1B histone chaperone. (202 aa)
	STX2	Syntaxin 2; Belongs to the syntaxin family. (317 aa)
	BET1L	t-SNARE coiled-coil homology domain-containing protein. (187 aa)
	STX6	Syntaxin 6; Belongs to the syntaxin family. (255 aa)
	TSNARE1	Uncharacterized protein. (775 aa)
	USE1	Unconventional SNARE in the ER 1. (297 aa)
	PYROXD1	Pyridine nucleotide-disulphide oxidoreductase domain 1. (502 aa)
	VAMP5	Vesicle associated membrane protein 5. (165 aa)
	STX1B	Syntaxin 1B; Belongs to the syntaxin family. (314 aa)
	EEF1AKNMT	EEF1A lysine and N-terminal methyltransferase. (699 aa)
	STX16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (326 aa)
	YKT6	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family. (198 aa)
	HAUS2	HAUS augmin like complex subunit 2. (235 aa)
	INTS12	Integrator complex subunit 12. (462 aa)
	SEC22B	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family. (215 aa)
	CAMTA1	Calmodulin binding transcription activator 1. (1675 aa)
	SNAP29	Synaptosome associated protein 29. (258 aa)
	RNF181	Ring finger protein 181. (153 aa)
	VAMP8	Vesicle associated membrane protein 8. (100 aa)
	PES1	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family. (618 aa)
	VTI1B	Vesicle transport through interaction with t-SNAREs 1B. (232 aa)
	STX17	Syntaxin 17; Belongs to the syntaxin family. (302 aa)
	A0A4W2EU02	t-SNARE coiled-coil homology domain-containing protein. (161 aa)
	MED6	Mediator complex subunit 6. (268 aa)
	PHF19	PHD finger protein 19. (580 aa)
	MTF2	Metal response element binding transcription factor 2. (593 aa)
	SNAP23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (211 aa)
	CIT	Citron Rho-interacting kinase; Plays a role in cytokinesis. Displays serine/threonine protein kinase activity; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2068 aa)
	STX11	Syntaxin 11; Belongs to the syntaxin family. (287 aa)
	NAIF1	Nuclear apoptosis inducing factor 1. (327 aa)
	GOSR1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (250 aa)
	STX4	Syntaxin 4; Belongs to the syntaxin family. (447 aa)
	STX5	Syntaxin 5; Belongs to the syntaxin family. (355 aa)
	STX8	Syntaxin 8. (369 aa)
	SEC22C	SEC22 homolog C, vesicle trafficking protein; Belongs to the synaptobrevin family. (303 aa)
	CAMTA2	Calmodulin binding transcription activator 2. (1234 aa)
	A0A4W2C903	V-SNARE coiled-coil homology domain-containing protein. (228 aa)
	BNIP1	BCL2 interacting protein 1. (228 aa)
	ASF1A	Anti-silencing function 1A histone chaperone. (204 aa)
	VTI1A	Vesicle transport through interaction with t-SNAREs 1A. (224 aa)
	STX3	Syntaxin 3; Belongs to the syntaxin family. (359 aa)
	VAMP2	V-SNARE coiled-coil homology domain-containing protein. (118 aa)
	MTERF3	Mitochondrial transcription termination factor 3. (417 aa)
	VAMP4	Vesicle associated membrane protein 4. (144 aa)
	LYZL6	Uncharacterized protein; Belongs to the glycosyl hydrolase 22 family. (335 aa)
	NPEPL1	Aminopeptidase like 1. (602 aa)
	SEC22A	SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family. (307 aa)
	BET1	Bet1 golgi vesicular membrane trafficking protein. (142 aa)
	MTERF1	Mitochondrial transcription termination factor 1. (397 aa)
	SNAP47	Synaptosome associated protein 47. (480 aa)
	MTERF2	Mitochondrial transcription termination factor 2. (385 aa)
	STX18	Syntaxin 18. (440 aa)
	STX1A	Syntaxin 1A. (373 aa)

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2C903	A0A4W2EU02	A0A4W2C903	A0A4W2EU02	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.701
A0A4W2C903	BET1	A0A4W2C903	A0A4W2D8S7	V-SNARE coiled-coil homology domain-containing protein.	Bet1 golgi vesicular membrane trafficking protein.	0.576
A0A4W2C903	BET1L	A0A4W2C903	A0A4W2HAE1	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.534
A0A4W2C903	GOSR1	A0A4W2C903	A0A4W2BM86	V-SNARE coiled-coil homology domain-containing protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.623
A0A4W2C903	HAUS2	A0A4W2C903	A0A4W2GZH1	V-SNARE coiled-coil homology domain-containing protein.	HAUS augmin like complex subunit 2.	0.580
A0A4W2C903	NAIF1	A0A4W2C903	A0A4W2EGV0	V-SNARE coiled-coil homology domain-containing protein.	Nuclear apoptosis inducing factor 1.	0.507
A0A4W2C903	SEC22B	A0A4W2C903	A0A4W2GMD8	V-SNARE coiled-coil homology domain-containing protein.	SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.	0.424
A0A4W2C903	SNAP23	A0A4W2C903	A0A4W2EJF6	V-SNARE coiled-coil homology domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.968
A0A4W2C903	SNAP29	A0A4W2C903	A0A4W2G021	V-SNARE coiled-coil homology domain-containing protein.	Synaptosome associated protein 29.	0.616
A0A4W2C903	SNAP47	A0A4W2C903	A0A4W2DF79	V-SNARE coiled-coil homology domain-containing protein.	Synaptosome associated protein 47.	0.660
A0A4W2C903	STX11	A0A4W2C903	A0A4W2EHT1	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 11; Belongs to the syntaxin family.	0.721
A0A4W2C903	STX16	A0A4W2C903	A0A4W2EC40	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.791
A0A4W2C903	STX17	A0A4W2C903	A0A4W2EWU2	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 17; Belongs to the syntaxin family.	0.667
A0A4W2C903	STX18	A0A4W2C903	A0A4W2DNS1	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 18.	0.572
A0A4W2C903	STX19	A0A4W2C903	A0A4W2I372	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 19; Belongs to the syntaxin family.	0.552
A0A4W2C903	STX1A	A0A4W2C903	A0A4W2DR01	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 1A.	0.975
A0A4W2C903	STX1B	A0A4W2C903	A0A4W2E6P8	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 1B; Belongs to the syntaxin family.	0.967
A0A4W2C903	STX2	A0A4W2C903	A0A4W2HUV7	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 2; Belongs to the syntaxin family.	0.969
A0A4W2C903	STX3	A0A4W2C903	A0A4W2CI59	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 3; Belongs to the syntaxin family.	0.964
A0A4W2C903	STX4	A0A4W2C903	A0A4W2BNQ4	V-SNARE coiled-coil homology domain-containing protein.	Syntaxin 4; Belongs to the syntaxin family.	0.971

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