(10 nodes) RNA polymerase II, core complex, and DSIF complex network (Chlamydomonas reinhardtii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K3CWA4	TFIIS central domain-containing protein. (230 aa)
	A0A2K3CX59	Uncharacterized protein. (913 aa)
	RPB3	RPOLD domain-containing protein. (372 aa)
	A0A2K3DII3	RPOL4c domain-containing protein. (140 aa)
	A0A2K3DQM7	Uncharacterized protein. (1616 aa)
	A8HQJ4_CHLRE	Global transcription factor. (1188 aa)
	RPB11	DNA-directed RNA polymerase II, 13.6 kDa polypeptide. (115 aa)
	A8I2N9_CHLRE	Transcription initiation factor. (122 aa)
	RPB9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	RPB7A	DNA-directed RNA polymerase II, 19 kDa polypeptide. (176 aa)

Your Current Organism:

Chlamydomonas reinhardtii

NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K3CWA4	A0A2K3CX59	A0A2K3CWA4	A0A2K3CX59	TFIIS central domain-containing protein.	Uncharacterized protein.	0.611
A0A2K3CWA4	A0A2K3DII3	A0A2K3CWA4	A0A2K3DII3	TFIIS central domain-containing protein.	RPOL4c domain-containing protein.	0.902
A0A2K3CWA4	A0A2K3DQM7	A0A2K3CWA4	A0A2K3DQM7	TFIIS central domain-containing protein.	Uncharacterized protein.	0.705
A0A2K3CWA4	A8HQJ4_CHLRE	A0A2K3CWA4	A8HQJ4	TFIIS central domain-containing protein.	Global transcription factor.	0.793
A0A2K3CWA4	A8I2N9_CHLRE	A0A2K3CWA4	A8I2N9	TFIIS central domain-containing protein.	Transcription initiation factor.	0.889
A0A2K3CWA4	RPB11	A0A2K3CWA4	A8HRP7	TFIIS central domain-containing protein.	DNA-directed RNA polymerase II, 13.6 kDa polypeptide.	0.905
A0A2K3CWA4	RPB3	A0A2K3CWA4	A0A2K3D929	TFIIS central domain-containing protein.	RPOLD domain-containing protein.	0.893
A0A2K3CWA4	RPB7A	A0A2K3CWA4	A8ISK2	TFIIS central domain-containing protein.	DNA-directed RNA polymerase II, 19 kDa polypeptide.	0.785
A0A2K3CWA4	RPB9	A0A2K3CWA4	A8IJY1	TFIIS central domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.888
A0A2K3CX59	A0A2K3CWA4	A0A2K3CX59	A0A2K3CWA4	Uncharacterized protein.	TFIIS central domain-containing protein.	0.611
A0A2K3CX59	A0A2K3DII3	A0A2K3CX59	A0A2K3DII3	Uncharacterized protein.	RPOL4c domain-containing protein.	0.867
A0A2K3CX59	A0A2K3DQM7	A0A2K3CX59	A0A2K3DQM7	Uncharacterized protein.	Uncharacterized protein.	0.743
A0A2K3CX59	A8HQJ4_CHLRE	A0A2K3CX59	A8HQJ4	Uncharacterized protein.	Global transcription factor.	0.888
A0A2K3CX59	A8I2N9_CHLRE	A0A2K3CX59	A8I2N9	Uncharacterized protein.	Transcription initiation factor.	0.939
A0A2K3CX59	RPB11	A0A2K3CX59	A8HRP7	Uncharacterized protein.	DNA-directed RNA polymerase II, 13.6 kDa polypeptide.	0.897
A0A2K3CX59	RPB3	A0A2K3CX59	A0A2K3D929	Uncharacterized protein.	RPOLD domain-containing protein.	0.929
A0A2K3CX59	RPB7A	A0A2K3CX59	A8ISK2	Uncharacterized protein.	DNA-directed RNA polymerase II, 19 kDa polypeptide.	0.810
A0A2K3CX59	RPB9	A0A2K3CX59	A8IJY1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.920
A0A2K3DII3	A0A2K3CWA4	A0A2K3DII3	A0A2K3CWA4	RPOL4c domain-containing protein.	TFIIS central domain-containing protein.	0.902
A0A2K3DII3	A0A2K3CX59	A0A2K3DII3	A0A2K3CX59	RPOL4c domain-containing protein.	Uncharacterized protein.	0.867

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About