(25 nodes) Nuclear Envelope Breakdown network (Chlamydomonas reinhardtii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K3CQ27	Nuclear pore protein. (952 aa)
	A0A2K3CT54	Uncharacterized protein. (940 aa)
	A0A2K3CTE7	ANK_REP_REGION domain-containing protein. (2068 aa)
	A0A2K3CU60	Uncharacterized protein. (1419 aa)
	A0A2K3CUA8	Uncharacterized protein. (1474 aa)
	A0A2K3D060	Uncharacterized protein. (2279 aa)
	A0A2K3D0V4	Uncharacterized protein. (748 aa)
	A0A2K3D0V6	Uncharacterized protein. (2607 aa)
	A0A2K3D606	RRM Nup35-type domain-containing protein. (268 aa)
	A0A2K3D6R8	Nup54 domain-containing protein. (467 aa)
	A0A2K3D9G6	Uncharacterized protein. (873 aa)
	A0A2K3D9H2	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (381 aa)
	A0A2K3DC91	Uncharacterized protein. (636 aa)
	A0A2K3DDA3	Nucleoporin_N domain-containing protein. (1778 aa)
	CPLD36	Uncharacterized protein. (141 aa)
	A0A2K3DI91	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (898 aa)
	A0A2K3DJ82	Uncharacterized protein. (1881 aa)
	A0A2K3DKW0	Uncharacterized protein. (1281 aa)
	A0A2K3DM87	Uncharacterized protein. (515 aa)
	A0A2K3DPJ7	Uncharacterized protein. (956 aa)
	A0A2K3E0Z7	Peptidase S59 domain-containing protein. (2327 aa)
	A0A2K3E7Z1	Uncharacterized protein. (572 aa)
	SEC13L	COP-II coat subunit, nucleoporin; Belongs to the WD repeat SEC13 family. (338 aa)
	RAE1	mRNA export protein. (352 aa)
	SEC13	COP-II coat subunit; Belongs to the WD repeat SEC13 family. (299 aa)

Your Current Organism:

Chlamydomonas reinhardtii

NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K3CQ27	A0A2K3CT54	A0A2K3CQ27	A0A2K3CT54	Nuclear pore protein.	Uncharacterized protein.	0.943
A0A2K3CQ27	A0A2K3CTE7	A0A2K3CQ27	A0A2K3CTE7	Nuclear pore protein.	ANK_REP_REGION domain-containing protein.	0.922
A0A2K3CQ27	A0A2K3CU60	A0A2K3CQ27	A0A2K3CU60	Nuclear pore protein.	Uncharacterized protein.	0.923
A0A2K3CQ27	A0A2K3CUA8	A0A2K3CQ27	A0A2K3CUA8	Nuclear pore protein.	Uncharacterized protein.	0.952
A0A2K3CQ27	A0A2K3D060	A0A2K3CQ27	A0A2K3D060	Nuclear pore protein.	Uncharacterized protein.	0.999
A0A2K3CQ27	A0A2K3D0V4	A0A2K3CQ27	A0A2K3D0V4	Nuclear pore protein.	Uncharacterized protein.	0.948
A0A2K3CQ27	A0A2K3D0V6	A0A2K3CQ27	A0A2K3D0V6	Nuclear pore protein.	Uncharacterized protein.	0.948
A0A2K3CQ27	A0A2K3D606	A0A2K3CQ27	A0A2K3D606	Nuclear pore protein.	RRM Nup35-type domain-containing protein.	0.999
A0A2K3CQ27	A0A2K3D6R8	A0A2K3CQ27	A0A2K3D6R8	Nuclear pore protein.	Nup54 domain-containing protein.	0.952
A0A2K3CQ27	A0A2K3D9G6	A0A2K3CQ27	A0A2K3D9G6	Nuclear pore protein.	Uncharacterized protein.	0.962
A0A2K3CQ27	A0A2K3D9H2	A0A2K3CQ27	A0A2K3D9H2	Nuclear pore protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.962
A0A2K3CQ27	A0A2K3DC91	A0A2K3CQ27	A0A2K3DC91	Nuclear pore protein.	Uncharacterized protein.	0.997
A0A2K3CQ27	A0A2K3DDA3	A0A2K3CQ27	A0A2K3DDA3	Nuclear pore protein.	Nucleoporin_N domain-containing protein.	0.999
A0A2K3CQ27	A0A2K3DI91	A0A2K3CQ27	A0A2K3DI91	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
A0A2K3CQ27	A0A2K3DJ82	A0A2K3CQ27	A0A2K3DJ82	Nuclear pore protein.	Uncharacterized protein.	0.962
A0A2K3CQ27	A0A2K3DKW0	A0A2K3CQ27	A0A2K3DKW0	Nuclear pore protein.	Uncharacterized protein.	0.913
A0A2K3CQ27	A0A2K3DM87	A0A2K3CQ27	A0A2K3DM87	Nuclear pore protein.	Uncharacterized protein.	0.943
A0A2K3CQ27	A0A2K3DPJ7	A0A2K3CQ27	A0A2K3DPJ7	Nuclear pore protein.	Uncharacterized protein.	0.998
A0A2K3CQ27	A0A2K3E0Z7	A0A2K3CQ27	A0A2K3E0Z7	Nuclear pore protein.	Peptidase S59 domain-containing protein.	0.913
A0A2K3CQ27	A0A2K3E7Z1	A0A2K3CQ27	A0A2K3E7Z1	Nuclear pore protein.	Uncharacterized protein.	0.999

page 1 of 30

Server load: low (28%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About