(11 nodes) Mixed, incl. Signal complex assembly, and Protein tyrosine phosphatase, catalytic domain network (Chlamydomonas reinhardtii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K3CQW4	Uncharacterized protein. (1492 aa)
	A0A2K3CUG0	Uncharacterized protein. (2147 aa)
	A0A2K3D9D8	LIM zinc-binding domain-containing protein. (742 aa)
	A0A2K3DB82	Uncharacterized protein. (553 aa)
	A0A2K3DE23	Uncharacterized protein. (425 aa)
	A0A2K3DGQ1	SAP domain-containing protein. (575 aa)
	A0A2K3DGQ6	SAP domain-containing protein. (246 aa)
	A0A2K3DLJ0	Uncharacterized protein. (1655 aa)
	A0A2K3E389	Protein kinase domain-containing protein. (2036 aa)
	A0A2K3E4H2	Uncharacterized protein. (2239 aa)
	A0A2K3E4P2	Protein kinase domain-containing protein. (2272 aa)

Your Current Organism:

Chlamydomonas reinhardtii

NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2K3CQW4	A0A2K3DE23	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K3CQW4	A0A2K3E389	Uncharacterized protein.	Protein kinase domain-containing protein.	0.454
A0A2K3CQW4	A0A2K3E4H2	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A2K3CQW4	A0A2K3E4P2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.454
A0A2K3CUG0	A0A2K3DE23	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K3CUG0	A0A2K3E389	Uncharacterized protein.	Protein kinase domain-containing protein.	0.454
A0A2K3CUG0	A0A2K3E4H2	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A2K3CUG0	A0A2K3E4P2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.454
A0A2K3D9D8	A0A2K3DE23	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.436
A0A2K3D9D8	A0A2K3E389	LIM zinc-binding domain-containing protein.	Protein kinase domain-containing protein.	0.609
A0A2K3D9D8	A0A2K3E4H2	LIM zinc-binding domain-containing protein.	Uncharacterized protein.	0.609
A0A2K3D9D8	A0A2K3E4P2	LIM zinc-binding domain-containing protein.	Protein kinase domain-containing protein.	0.609
A0A2K3DB82	A0A2K3DE23	Uncharacterized protein.	Uncharacterized protein.	0.716
A0A2K3DB82	A0A2K3E389	Uncharacterized protein.	Protein kinase domain-containing protein.	0.442
A0A2K3DB82	A0A2K3E4H2	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A2K3DB82	A0A2K3E4P2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.442
A0A2K3DE23	A0A2K3CQW4	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K3DE23	A0A2K3CUG0	Uncharacterized protein.	Uncharacterized protein.	0.501
A0A2K3DE23	A0A2K3D9D8	Uncharacterized protein.	LIM zinc-binding domain-containing protein.	0.436
A0A2K3DE23	A0A2K3DB82	Uncharacterized protein.	Uncharacterized protein.	0.716

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