(34 nodes) Mixed, incl. Trichohyalin-plectin-homology domain, and Cilium network (Chlamydomonas reinhardtii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2K3CNK8	Uncharacterized protein. (442 aa)
	FAP127	Uncharacterized protein. (505 aa)
	FAP52	Uncharacterized protein. (633 aa)
	FAP126	Uncharacterized protein. (137 aa)
	A0A2K3D7C7	Uncharacterized protein. (189 aa)
	FAP20	DUF667 domain-containing protein. (190 aa)
	FAP141	Uncharacterized protein. (95 aa)
	FAP276	Uncharacterized protein. (87 aa)
	RIB43a	Uncharacterized protein. (346 aa)
	FAP53	Uncharacterized protein. (482 aa)
	FAP166	Uncharacterized protein. (214 aa)
	FAP129	Uncharacterized protein. (483 aa)
	FAP210	Uncharacterized protein. (462 aa)
	FAP45	Uncharacterized protein. (501 aa)
	FAP143	Uncharacterized protein. (268 aa)
	A0A2K3E5X9	Uncharacterized protein. (274 aa)
	FAP68	Flagellar associated protein. (312 aa)
	FAP161	Flagellar associated protein. (403 aa)
	FAP95	Flagellar associated protein. (235 aa)
	FAP252	Flagellar associated protein. (352 aa)
	FAP90	Flagellar associated protein. (242 aa)
	FAP273	Flagellar associated protein. (139 aa)
	TUB1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (443 aa)
	A8IY81_CHLRE	Predicted protein. (391 aa)
	FAP106	Flagellar associated protein. (240 aa)
	FAP112	Flagellar associated protein. (475 aa)
	FAP85	Flagellar associated protein. (197 aa)
	FAP107	Flagellar associated protein. (238 aa)
	FAP115	Flagellar associated protein. (230 aa)
	FAP222	Flagellar associated protein. (146 aa)
	FAP182	Flagellar associated protein. (471 aa)
	PACRG	Parkin-co-regulated gene product. (307 aa)
	TUA2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	RIB72	Protofilament ribbon protein of flagellar microtubules. (635 aa)

Your Current Organism:

Chlamydomonas reinhardtii

NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K3CNK8	A0A2K3D7C7	A0A2K3CNK8	A0A2K3D7C7	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	A0A2K3E5X9	A0A2K3CNK8	A0A2K3E5X9	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	A8IY81_CHLRE	A0A2K3CNK8	A8IY81	Uncharacterized protein.	Predicted protein.	0.800
A0A2K3CNK8	FAP106	A0A2K3CNK8	A8J098	Uncharacterized protein.	Flagellar associated protein.	0.901
A0A2K3CNK8	FAP107	A0A2K3CNK8	A8JC52	Uncharacterized protein.	Flagellar associated protein.	0.800
A0A2K3CNK8	FAP112	A0A2K3CNK8	A8J0X0	Uncharacterized protein.	Flagellar associated protein.	0.800
A0A2K3CNK8	FAP115	A0A2K3CNK8	A8JDK1	Uncharacterized protein.	Flagellar associated protein.	0.801
A0A2K3CNK8	FAP126	A0A2K3CNK8	A0A2K3D565	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	FAP127	A0A2K3CNK8	A0A2K3CRG7	Uncharacterized protein.	Uncharacterized protein.	0.827
A0A2K3CNK8	FAP129	A0A2K3CNK8	A0A2K3DZI2	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	FAP141	A0A2K3CNK8	A0A2K3DRF8	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	FAP143	A0A2K3CNK8	A0A2K3E1X6	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	FAP161	A0A2K3CNK8	A8HRH3	Uncharacterized protein.	Flagellar associated protein.	0.896
A0A2K3CNK8	FAP166	A0A2K3CNK8	A0A2K3DZF0	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A2K3CNK8	FAP182	A0A2K3CNK8	A8JHR6	Uncharacterized protein.	Flagellar associated protein.	0.800
A0A2K3CNK8	FAP20	A0A2K3CNK8	A0A2K3DLB7	Uncharacterized protein.	DUF667 domain-containing protein.	0.887
A0A2K3CNK8	FAP210	A0A2K3CNK8	A0A2K3E0E3	Uncharacterized protein.	Uncharacterized protein.	0.880
A0A2K3CNK8	FAP222	A0A2K3CNK8	A8JF23	Uncharacterized protein.	Flagellar associated protein.	0.800
A0A2K3CNK8	FAP252	A0A2K3CNK8	A8I1S7	Uncharacterized protein.	Flagellar associated protein.	0.800
A0A2K3CNK8	FAP273	A0A2K3CNK8	A8IXN7	Uncharacterized protein.	Flagellar associated protein.	0.800

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