(17 nodes) ESCRT complex network (Chlamydomonas reinhardtii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS2B	Uncharacterized protein. (212 aa)
	VPS20	Uncharacterized protein. (234 aa)
	A0A2K3D6B3	Uncharacterized protein. (531 aa)
	A0A2K3DJ88	Uncharacterized protein. (213 aa)
	A0A2K3DLC5	Uncharacterized protein. (592 aa)
	A0A2K3DPR1	Uncharacterized protein. (334 aa)
	SNF7	Uncharacterized protein. (233 aa)
	VPS2A	Uncharacterized protein. (209 aa)
	A0A2K3DV43	Uncharacterized protein. (1159 aa)
	A0A2K3DWB4	Uncharacterized protein. (768 aa)
	VPS25	Subunit of ESCRT-II complex. (175 aa)
	VPS22	Subunit of ESCRT-II complex. (265 aa)
	VPS46	Subunit of the ESCRT-III complex. (199 aa)
	VPS28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (225 aa)
	VPS37	Subunit of the ESCRT-I complex. (342 aa)
	LSD1	Zinc-finger protein Lsd1. (177 aa)
	A8J7X6_CHLRE	Predicted protein. (181 aa)

Your Current Organism:

Chlamydomonas reinhardtii

NCBI taxonomy Id: 3055
Other names: C. reinhardtii, Chlamydomonas smithii, Chlamydomonas smithii R.W.Howshaw & H.Ettl, SAG 53.72 [[Chlamydomonas smithii]], SAG 54.72 [[Chlamydomonas smithii]], UTEX 90

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2K3D6B3	A0A2K3DLC5	A0A2K3D6B3	A0A2K3DLC5	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A2K3DJ88	A0A2K3DLC5	A0A2K3DJ88	A0A2K3DLC5	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A2K3DJ88	A0A2K3DPR1	A0A2K3DJ88	A0A2K3DPR1	Uncharacterized protein.	Uncharacterized protein.	0.953
A0A2K3DJ88	A0A2K3DV43	A0A2K3DJ88	A0A2K3DV43	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A2K3DJ88	A0A2K3DWB4	A0A2K3DJ88	A0A2K3DWB4	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A2K3DJ88	A8J7X6_CHLRE	A0A2K3DJ88	A8J7X6	Uncharacterized protein.	Predicted protein.	0.526
A0A2K3DJ88	LSD1	A0A2K3DJ88	A8J6A2	Uncharacterized protein.	Zinc-finger protein Lsd1.	0.939
A0A2K3DJ88	SNF7	A0A2K3DJ88	A0A2K3DPR9	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A2K3DJ88	VPS20	A0A2K3DJ88	A0A2K3D108	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A2K3DJ88	VPS22	A0A2K3DJ88	A8IRC0	Uncharacterized protein.	Subunit of ESCRT-II complex.	0.972
A0A2K3DJ88	VPS25	A0A2K3DJ88	A8IA47	Uncharacterized protein.	Subunit of ESCRT-II complex.	0.540
A0A2K3DJ88	VPS28	A0A2K3DJ88	A8J3R6	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.959
A0A2K3DJ88	VPS2A	A0A2K3DJ88	A0A2K3DTX2	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A2K3DJ88	VPS2B	A0A2K3DJ88	A0A2K3CRC8	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A2K3DJ88	VPS37	A0A2K3DJ88	A8J4D6	Uncharacterized protein.	Subunit of the ESCRT-I complex.	0.948
A0A2K3DJ88	VPS46	A0A2K3DJ88	A8IRR6	Uncharacterized protein.	Subunit of the ESCRT-III complex.	0.982
A0A2K3DLC5	A0A2K3D6B3	A0A2K3DLC5	A0A2K3D6B3	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A2K3DLC5	A0A2K3DJ88	A0A2K3DLC5	A0A2K3DJ88	Uncharacterized protein.	Uncharacterized protein.	0.962
A0A2K3DLC5	A0A2K3DPR1	A0A2K3DLC5	A0A2K3DPR1	Uncharacterized protein.	Uncharacterized protein.	0.821
A0A2K3DLC5	A0A2K3DV43	A0A2K3DLC5	A0A2K3DV43	Uncharacterized protein.	Uncharacterized protein.	0.540

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