5 items (Otolemur garnettii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOXN1	Forkhead box N1. (650 aa)
	GPRC5D	G protein-coupled receptor class C group 5 member D. (343 aa)
	VSIG8	V-set and immunoglobulin domain containing 8. (415 aa)
	PADI3	Peptidyl arginine deiminase 3. (664 aa)
	HOXC13	Homeobox C13. (329 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOXN1	HOXC13	ENSOGAP00000006355	ENSOGAP00000019536	Forkhead box N1.	Homeobox C13.	0.596
FOXN1	PADI3	ENSOGAP00000006355	ENSOGAP00000013018	Forkhead box N1.	Peptidyl arginine deiminase 3.	0.409
FOXN1	VSIG8	ENSOGAP00000006355	ENSOGAP00000009576	Forkhead box N1.	V-set and immunoglobulin domain containing 8.	0.421
GPRC5D	VSIG8	ENSOGAP00000009079	ENSOGAP00000009576	G protein-coupled receptor class C group 5 member D.	V-set and immunoglobulin domain containing 8.	0.538
HOXC13	FOXN1	ENSOGAP00000019536	ENSOGAP00000006355	Homeobox C13.	Forkhead box N1.	0.596
HOXC13	PADI3	ENSOGAP00000019536	ENSOGAP00000013018	Homeobox C13.	Peptidyl arginine deiminase 3.	0.447
PADI3	FOXN1	ENSOGAP00000013018	ENSOGAP00000006355	Peptidyl arginine deiminase 3.	Forkhead box N1.	0.409
PADI3	HOXC13	ENSOGAP00000013018	ENSOGAP00000019536	Peptidyl arginine deiminase 3.	Homeobox C13.	0.447
PADI3	VSIG8	ENSOGAP00000013018	ENSOGAP00000009576	Peptidyl arginine deiminase 3.	V-set and immunoglobulin domain containing 8.	0.445
VSIG8	FOXN1	ENSOGAP00000009576	ENSOGAP00000006355	V-set and immunoglobulin domain containing 8.	Forkhead box N1.	0.421
VSIG8	GPRC5D	ENSOGAP00000009576	ENSOGAP00000009079	V-set and immunoglobulin domain containing 8.	G protein-coupled receptor class C group 5 member D.	0.538
VSIG8	PADI3	ENSOGAP00000009576	ENSOGAP00000013018	V-set and immunoglobulin domain containing 8.	Peptidyl arginine deiminase 3.	0.445