(52 nodes) Mixed, incl. Peroxisomal membrane transport, and Peroxisomal lipid metabolism network (Otolemur garnettii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX11B	Peroxisomal biogenesis factor 11 beta. (259 aa)
	PEX7	Peroxisomal biogenesis factor 7. (262 aa)
	LONP2	Lon protease homolog; Belongs to the peptidase S16 family. (818 aa)
	CHAT	Choline O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (639 aa)
	HSDL2	Hydroxysteroid dehydrogenase like 2. (362 aa)
	PEX11G	Peroxisomal biogenesis factor 11 gamma. (241 aa)
	LMBRD1	LMBR1 domain containing 1. (542 aa)
	EPHX2	Epoxide hydrolase 2. (555 aa)
	SLC25A36	Solute carrier family 25 member 36; Belongs to the mitochondrial carrier (TC 2.A.29) family. (311 aa)
	PEX12	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (359 aa)
	SCP2D1	SCP2 sterol binding domain containing 1. (156 aa)
	ACAA1	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family. (425 aa)
	H0WTR7_OTOGA	Uncharacterized protein. (242 aa)
	PXMP2	Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (195 aa)
	GDAP1	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily. (358 aa)
	SLC25A33	Solute carrier family 25 member 33; Belongs to the mitochondrial carrier (TC 2.A.29) family. (321 aa)
	MPV17	Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family. (191 aa)
	GDAP1L1	Uncharacterized protein. (367 aa)
	PHYH	Phytanoyl-CoA 2-hydroxylase. (343 aa)
	CRAT	Carnitine acetyltransferase isoform 1 (Predicted); Belongs to the carnitine/choline acetyltransferase family. (626 aa)
	ABCD3	ATP binding cassette subfamily D member 3. (622 aa)
	PXMP4	Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family. (212 aa)
	PEX5	Peroxisomal biogenesis factor 5. (661 aa)
	PEX1	Peroxisomal biogenesis factor 1. (1216 aa)
	PEX14	Peroxisomal biogenesis factor 14. (376 aa)
	ECI2	Enoyl-CoA delta isomerase 2. (364 aa)
	PEX16	Peroxisomal membrane protein PEX16. (338 aa)
	PEX6	Peroxisomal biogenesis factor 6. (980 aa)
	AGPS	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family. (562 aa)
	SCP2	Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family. (547 aa)
	ABCD4	ATP binding cassette subfamily D member 4. (606 aa)
	PEX5L	Peroxisomal biogenesis factor 5 like. (595 aa)
	CROT	Carnitine O-octanoyltransferase; Belongs to the carnitine/choline acetyltransferase family. (612 aa)
	PEX3	Uncharacterized protein. (373 aa)
	ACBD5	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters. (524 aa)
	SLC25A17	Solute carrier family 25 member 17; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	FAM185A	Family with sequence similarity 185 member A. (299 aa)
	H0XL55_OTOGA	Uncharacterized protein. (373 aa)
	PEX26	Peroxisomal biogenesis factor 26. (362 aa)
	GNPAT	Dihydroxyacetone phosphate acyltransferase. (693 aa)
	LOC111728525	ACB domain-containing protein. (87 aa)
	PEX11A	Peroxisomal biogenesis factor 11 alpha. (230 aa)
	LOC100960865	MaoC-like domain-containing protein. (168 aa)
	PEX2	Peroxisomal biogenesis factor 2. (305 aa)
	TYSND1	Trypsin domain containing 1. (566 aa)
	LOC100958119	MaoC-like domain-containing protein. (168 aa)
	ABCD2	ATP binding cassette subfamily D member 2. (741 aa)
	MPV17L	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (196 aa)
	ABCD1	ATP binding cassette subfamily D member 1. (746 aa)
	PEX13	Peroxisomal biogenesis factor 13. (407 aa)
	PEX19	Uncharacterized protein. (300 aa)
	PEX10	Peroxisomal biogenesis factor 10. (326 aa)

Your Current Organism:

Otolemur garnettii

NCBI taxonomy Id: 30611
Other names: Galago garnetti, Galago garnettii, O. garnettii, small-eared galago

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD1	ABCD2	ENSOGAP00000021438	ENSOGAP00000021042	ATP binding cassette subfamily D member 1.	ATP binding cassette subfamily D member 2.	0.907
ABCD1	ABCD3	ENSOGAP00000021438	ENSOGAP00000008572	ATP binding cassette subfamily D member 1.	ATP binding cassette subfamily D member 3.	0.944
ABCD1	ABCD4	ENSOGAP00000021438	ENSOGAP00000012151	ATP binding cassette subfamily D member 1.	ATP binding cassette subfamily D member 4.	0.898
ABCD1	ACAA1	ENSOGAP00000021438	ENSOGAP00000005561	ATP binding cassette subfamily D member 1.	Acetyl-CoA acyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.447
ABCD1	ACBD5	ENSOGAP00000021438	ENSOGAP00000014220	ATP binding cassette subfamily D member 1.	Acyl-CoA-binding domain-containing protein 5; Binds medium- and long-chain acyl-CoA esters.	0.622
ABCD1	AGPS	ENSOGAP00000021438	ENSOGAP00000011813	ATP binding cassette subfamily D member 1.	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.	0.512
ABCD1	ECI2	ENSOGAP00000021438	ENSOGAP00000010413	ATP binding cassette subfamily D member 1.	Enoyl-CoA delta isomerase 2.	0.742
ABCD1	FAM185A	ENSOGAP00000021438	ENSOGAP00000016287	ATP binding cassette subfamily D member 1.	Family with sequence similarity 185 member A.	0.732
ABCD1	GDAP1	ENSOGAP00000021438	ENSOGAP00000006155	ATP binding cassette subfamily D member 1.	Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.	0.638
ABCD1	GDAP1L1	ENSOGAP00000021438	ENSOGAP00000006902	ATP binding cassette subfamily D member 1.	Uncharacterized protein.	0.600
ABCD1	H0XL55_OTOGA	ENSOGAP00000021438	ENSOGAP00000016845	ATP binding cassette subfamily D member 1.	Uncharacterized protein.	0.818
ABCD1	HSDL2	ENSOGAP00000021438	ENSOGAP00000001918	ATP binding cassette subfamily D member 1.	Hydroxysteroid dehydrogenase like 2.	0.463
ABCD1	LMBRD1	ENSOGAP00000021438	ENSOGAP00000002381	ATP binding cassette subfamily D member 1.	LMBR1 domain containing 1.	0.735
ABCD1	LOC100958119	ENSOGAP00000021438	ENSOGAP00000020554	ATP binding cassette subfamily D member 1.	MaoC-like domain-containing protein.	0.531
ABCD1	LOC100960865	ENSOGAP00000021438	ENSOGAP00000018164	ATP binding cassette subfamily D member 1.	MaoC-like domain-containing protein.	0.531
ABCD1	LOC111728525	ENSOGAP00000021438	ENSOGAP00000017758	ATP binding cassette subfamily D member 1.	ACB domain-containing protein.	0.591
ABCD1	MPV17	ENSOGAP00000021438	ENSOGAP00000006406	ATP binding cassette subfamily D member 1.	Mitochondrial inner membrane protein MPV17; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.555
ABCD1	MPV17L	ENSOGAP00000021438	ENSOGAP00000021152	ATP binding cassette subfamily D member 1.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.555
ABCD1	PEX1	ENSOGAP00000021438	ENSOGAP00000009701	ATP binding cassette subfamily D member 1.	Peroxisomal biogenesis factor 1.	0.465
ABCD1	PEX11A	ENSOGAP00000021438	ENSOGAP00000017876	ATP binding cassette subfamily D member 1.	Peroxisomal biogenesis factor 11 alpha.	0.707